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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_11055 and AO353_11060 are separated by 106 nucleotides
AO353_11060 and AO353_11065 are separated by 180 nucleotides
AO353_11065 and AO353_11070 are separated by 270 nucleotides
AO353_11070 and AO353_11075 are separated by 319 nucleotides
AO353_11055: AO353_11055 - Holliday junction resolvase, at 2,417,089 to 2,417,397
_11055
AO353_11060: AO353_11060 - holliday junction resolvasome, helicase subunit, at 2,417,504 to 2,417,821
_11060
AO353_11065: AO353_11065 - hypothetical protein, at 2,418,002 to 2,418,211
_11065
AO353_11070: AO353_11070 - hypothetical protein, at 2,418,482 to 2,418,697
_11070
AO353_11075: AO353_11075 - acetyl-CoA hydrolase, at 2,419,017 to 2,420,510
_11075
Group
Condition
AO353
_11055
AO353
_11060
AO353
_11065
AO353
_11070
AO353
_11075
carbon source
acetate (C)
-0.3
+0.1
-0.1
N.D.
-2.5
stress
acetate 68 mM
+0.2
-0.1
-0.1
N.D.
-2.4
carbon source
acetate (C)
+0.2
+0.3
+0.0
N.D.
-2.7
carbon source
propionate (C)
-0.0
-0.6
-0.0
N.D.
-1.4
stress
Benzethonium chloride 0.025 mM
-0.3
-1.0
-0.2
N.D.
-0.1
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.1
-0.1
-0.1
N.D.
-1.2
stress
nitrate 200 mM
-1.3
-0.1
+0.0
N.D.
+0.1
motility
outer cut, LB soft agar motility assay
-0.2
-1.1
-0.0
N.D.
+0.1
carbon source
propionate (C)
+0.0
-0.0
-0.1
N.D.
-0.9
stress
perchlorate 75 mM
-0.5
-0.2
-0.3
N.D.
-0.0
carbon source
D-Glucose
-0.0
-0.7
-0.0
N.D.
-0.2
pH
Minimal media pH9
-0.0
-0.4
-0.4
N.D.
-0.2
carbon source
L-Ornithine
-0.3
-0.2
+0.0
N.D.
-0.5
carbon source
Carnitine Hydrochloride (C)
-0.4
-0.5
-0.1
N.D.
-0.1
nitrogen source
Parabanic Acid (N)
-0.5
-0.8
+0.2
N.D.
+0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.1
-1.0
-0.2
N.D.
+0.2
carbon source
D-Glucose
-0.5
+0.1
-0.3
N.D.
-0.3
motility
outer cut, LB soft agar motility assay
-0.2
-1.0
+0.5
N.D.
-0.1
stress
Fusidic 0.125 mg/ml
-1.1
+0.2
+0.1
N.D.
+0.0
temperature
LB 30C
+0.0
-0.8
+0.1
N.D.
+0.1
stress
Sisomicin 0.008 mg/ml
+0.4
-0.8
-0.3
N.D.
+0.1
stress
Tetracycline 0.0016 mg/ml
+0.2
-0.7
-0.1
N.D.
-0.1
motility
outer cut, LB soft agar motility assay
+0.5
-0.7
-0.3
N.D.
-0.1
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.3
-0.3
+0.1
N.D.
-0.5
nitrogen source
Inosine (N)
-0.1
-0.6
+0.4
N.D.
+0.0
carbon source
L-Ornithine
+0.1
-0.3
+0.4
N.D.
-0.4
carbon source
L-Citrulline
-0.1
+0.6
-0.5
N.D.
-0.2
stress
Cholin acetate 38 mM
+0.1
+0.2
-0.0
N.D.
-0.6
stress
Doxycycline hyclate 0.0006 mg/ml
+0.0
+1.0
-0.3
N.D.
-0.0
stress
Paraquat dichloride 0.032 mg/mL
+0.2
+0.7
+0.3
N.D.
+0.2
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