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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_10940 and AO353_10945 are separated by 46 nucleotides
AO353_10945 and AO353_10950 are separated by 200 nucleotides
AO353_10950 and AO353_10955 are separated by 12 nucleotides
AO353_10955 and AO353_10960 overlap by 4 nucleotides
AO353_10940: AO353_10940 - cytochrome, at 2,388,984 to 2,389,274
_10940
AO353_10945: AO353_10945 - cytochrome C, at 2,389,321 to 2,389,926
_10945
AO353_10950: AO353_10950 - thiol:disulfide interchange protein, at 2,390,127 to 2,390,756
_10950
AO353_10955: AO353_10955 - endonuclease, at 2,390,769 to 2,391,647
_10955
AO353_10960: AO353_10960 - hypothetical protein, at 2,391,644 to 2,393,791
_10960
Group
Condition
AO353
_10940
AO353
_10945
AO353
_10950
AO353
_10955
AO353
_10960
pH
Minimal media pH6
-0.4
-2.9
-4.1
-0.2
+0.0
motility
outer cut, LB soft agar motility assay
-0.3
-3.5
-1.9
-0.3
+0.2
pH
Minimal media pH6
+0.1
-1.3
-3.5
-0.3
+0.0
stress
Lomefloxacin 0.001 mM
+0.3
-2.6
-2.3
+0.2
-0.3
survival
4C survival; 672 hrs
-0.8
-2.3
-2.4
+0.9
+0.7
stress
Tetracycline 0.0016 mg/ml
+0.2
-2.4
-1.3
-0.3
-0.1
motility
outer cut, LB soft agar motility assay
+0.2
-2.5
-2.0
+0.3
+0.1
survival
4C survival; 360 hrs
+0.3
-1.8
-2.6
-0.0
+0.4
survival
4C survival; 192 hrs
-0.2
-1.5
-2.1
+0.0
+0.2
carbon source
D-Serine (C)
-0.4
-2.6
-0.1
-0.3
-0.1
motility
outer cut, LB soft agar motility assay
+0.2
-2.5
-1.6
-0.0
+0.5
carbon source
succinate (C)
-0.2
-2.7
-0.1
-0.0
-0.1
nitrogen source
L-Arginine (N)
-1.3
-1.4
-0.6
+0.1
+0.0
carbon source
Carnitine Hydrochloride (C)
-0.8
-2.0
-0.3
-0.0
-0.0
carbon source
L-Leucine (C)
-1.0
-1.7
+0.1
-0.4
+0.0
stress
Doxycycline hyclate 0.0002 mg/ml
+0.2
-0.6
-2.0
-0.2
-0.2
stress
nitrate 200 mM
-0.1
+1.1
-3.2
-0.4
+0.0
stress
perchlorate 75 mM
-0.4
+0.8
-2.1
-0.1
+0.0
stress
Rifampicin 0.005 mg/ml
-0.2
+0.7
-2.1
-0.2
+0.1
stress
Cisplatin 0.006 mg/ml
+1.1
+0.1
-1.8
-0.4
-0.1
stress
Cisplatin 0.006 mg/ml
+0.5
+0.8
-1.9
-0.4
-0.0
carbon source
acetate (C)
-0.2
-1.1
+1.8
+0.5
-0.1
carbon source
acetate (C)
-0.4
-1.6
+2.7
+0.6
-0.1
carbon source
L-Citrulline
+0.5
+1.5
+1.0
+0.2
-0.2
carbon source
L-Citrulline
+0.7
+1.8
+0.9
+0.1
-0.1
carbon source
L-Citrulline
+0.8
+1.4
+0.9
+0.2
+0.5
carbon source
D-Glucose
+0.6
+2.3
+1.0
+0.1
-0.1
carbon source
D-Glucose
+0.5
+2.0
+1.3
+0.2
+0.2
carbon source
L-Citrulline
+1.4
+2.6
+0.9
+0.4
+0.0
stress
Sisomicin 0.008 mg/ml
+1.0
+2.6
+2.7
-0.1
-0.1
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