Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_10940 and AO353_10945 are separated by 46 nucleotidesAO353_10945 and AO353_10950 are separated by 200 nucleotidesAO353_10950 and AO353_10955 are separated by 12 nucleotidesAO353_10955 and AO353_10960 overlap by 4 nucleotides AO353_10940: AO353_10940 - cytochrome, at 2,388,984 to 2,389,274 _10940 AO353_10945: AO353_10945 - cytochrome C, at 2,389,321 to 2,389,926 _10945 AO353_10950: AO353_10950 - thiol:disulfide interchange protein, at 2,390,127 to 2,390,756 _10950 AO353_10955: AO353_10955 - endonuclease, at 2,390,769 to 2,391,647 _10955 AO353_10960: AO353_10960 - hypothetical protein, at 2,391,644 to 2,393,791 _10960
Group Condition AO353_10940 AO353_10945 AO353_10950 AO353_10955 AO353_10960
pH Minimal media pH6 -0.4 -2.9 -4.1 -0.2 +0.0
motility outer cut, LB soft agar motility assay -0.3 -3.5 -1.9 -0.3 +0.2
pH Minimal media pH6 +0.1 -1.3 -3.5 -0.3 +0.0
stress Lomefloxacin 0.001 mM +0.3 -2.6 -2.3 +0.2 -0.3
survival 4C survival; 672 hrs -0.8 -2.3 -2.4 +0.9 +0.7
stress Tetracycline 0.0016 mg/ml +0.2 -2.4 -1.3 -0.3 -0.1
motility outer cut, LB soft agar motility assay +0.2 -2.5 -2.0 +0.3 +0.1
survival 4C survival; 360 hrs +0.3 -1.8 -2.6 -0.0 +0.4
survival 4C survival; 192 hrs -0.2 -1.5 -2.1 +0.0 +0.2
carbon source D-Serine (C) -0.4 -2.6 -0.1 -0.3 -0.1
motility outer cut, LB soft agar motility assay +0.2 -2.5 -1.6 -0.0 +0.5
carbon source succinate (C) -0.2 -2.7 -0.1 -0.0 -0.1
nitrogen source L-Arginine (N) -1.3 -1.4 -0.6 +0.1 +0.0
carbon source Carnitine Hydrochloride (C) -0.8 -2.0 -0.3 -0.0 -0.0
carbon source L-Leucine (C) -1.0 -1.7 +0.1 -0.4 +0.0
stress Doxycycline hyclate 0.0002 mg/ml +0.2 -0.6 -2.0 -0.2 -0.2
stress nitrate 200 mM -0.1 +1.1 -3.2 -0.4 +0.0
stress perchlorate 75 mM -0.4 +0.8 -2.1 -0.1 +0.0
stress Rifampicin 0.005 mg/ml -0.2 +0.7 -2.1 -0.2 +0.1
stress Cisplatin 0.006 mg/ml +1.1 +0.1 -1.8 -0.4 -0.1
stress Cisplatin 0.006 mg/ml +0.5 +0.8 -1.9 -0.4 -0.0
carbon source acetate (C) -0.2 -1.1 +1.8 +0.5 -0.1
carbon source acetate (C) -0.4 -1.6 +2.7 +0.6 -0.1
carbon source L-Citrulline +0.5 +1.5 +1.0 +0.2 -0.2
carbon source L-Citrulline +0.7 +1.8 +0.9 +0.1 -0.1
carbon source L-Citrulline +0.8 +1.4 +0.9 +0.2 +0.5
carbon source D-Glucose +0.6 +2.3 +1.0 +0.1 -0.1
carbon source D-Glucose +0.5 +2.0 +1.3 +0.2 +0.2
carbon source L-Citrulline +1.4 +2.6 +0.9 +0.4 +0.0
stress Sisomicin 0.008 mg/ml +1.0 +2.6 +2.7 -0.1 -0.1
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