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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_10815 and AO353_10820 are separated by 89 nucleotides
AO353_10820 and AO353_10825 are separated by 58 nucleotides
AO353_10825 and AO353_10830 are separated by 373 nucleotides
AO353_10830 and AO353_10835 are separated by 82 nucleotides
AO353_10815: AO353_10815 - carbonate dehydratase, at 2,364,914 to 2,365,645
_10815
AO353_10820: AO353_10820 - SulP family inorganic anion transporter, at 2,365,735 to 2,367,273
_10820
AO353_10825: AO353_10825 - hypothetical protein, at 2,367,332 to 2,367,982
_10825
AO353_10830: AO353_10830 - cytochrome B559 subunit alpha, at 2,368,356 to 2,369,483
_10830
AO353_10835: AO353_10835 - cytochrome oxidase subunit I, at 2,369,566 to 2,371,161
_10835
Group
Condition
AO353
_10815
AO353
_10820
AO353
_10825
AO353
_10830
AO353
_10835
carbon source
acetate (C)
-3.9
-0.7
-1.1
-0.0
+0.0
carbon source
acetate (C)
-3.0
-0.5
-0.8
-0.1
+0.2
motility
outer cut, LB soft agar motility assay
-0.1
-0.6
-1.8
+0.1
+0.1
survival
4C survival; 672 hrs
-0.4
+0.0
-1.4
-0.1
-0.4
motility
outer cut, LB soft agar motility assay
-0.3
-0.2
-2.0
+0.2
+0.1
survival
4C survival; 360 hrs
-0.2
-0.3
-1.3
+0.0
-0.2
stress
Cisplatin 0.006 mg/ml
-1.1
-0.4
-0.2
-0.0
+0.1
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.8
-0.3
-0.1
-0.2
-0.1
survival
4C survival; 192 hrs
+0.1
-0.4
-0.7
-0.0
-0.2
pH
Minimal media pH9
-0.5
-0.2
-0.7
+0.2
-0.0
motility
outer cut, LB soft agar motility assay
+0.4
+0.0
-2.2
+0.3
+0.3
carbon source
L-Citrulline
-0.1
-0.2
-0.7
+0.1
-0.2
carbon source
L-Asparagine (C)
-0.3
+0.0
-0.8
+0.2
-0.2
carbon source
D-Serine (C)
-0.2
-0.5
-0.7
+0.2
+0.0
carbon source
L-Malic (C)
-0.1
-0.3
-0.7
+0.2
-0.1
carbon source
Fumarate (C)
-0.2
-0.1
-0.9
+0.3
-0.1
pH
Minimal media pH9
-0.5
-0.4
-0.7
+0.3
+0.3
carbon source
D-Gluconic Acid (C)
-0.3
-0.2
-0.7
+0.2
-0.0
carbon source
Trisodium citrate (C)
-0.1
+0.1
-0.9
+0.1
+0.0
carbon source
L-Leucine (C)
+0.3
-0.1
-0.6
-0.1
-0.3
carbon source
D,L-Lactate (C)
-0.3
+0.1
-0.8
+0.2
-0.0
nitrogen source
L-Serine (N)
-0.1
-0.1
-0.7
+0.2
+0.0
carbon source
L-Citrulline
-0.3
-0.3
-0.3
+0.2
-0.0
carbon source
D-Lactate (C)
-0.2
+0.1
-0.7
+0.1
+0.0
carbon source
L-Lactate (C)
-0.1
+0.1
-0.8
+0.2
-0.1
carbon source
D,L-Lactate (C)
-0.3
+0.1
-0.7
+0.4
-0.2
carbon source
L-Malic (C)
-0.1
+0.1
-0.7
+0.3
-0.1
stress
nitrate 200 mM
+0.1
-0.1
-0.9
+0.6
-0.1
carbon source
L-Serine (C)
-0.1
+0.2
-0.7
+0.4
-0.0
carbon source
propionate (C)
-0.5
+0.3
+0.2
+0.1
-0.1
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