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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_10725 and AO353_10730 are separated by 132 nucleotides
AO353_10730 and AO353_10735 are separated by 67 nucleotides
AO353_10735 and AO353_10740 are separated by 241 nucleotides
AO353_10740 and AO353_10745 are separated by 127 nucleotides
AO353_10725: AO353_10725 - dodecin flavoprotein, at 2,349,509 to 2,349,724
_10725
AO353_10730: AO353_10730 - hypothetical protein, at 2,349,857 to 2,350,078
_10730
AO353_10735: AO353_10735 - hypothetical protein, at 2,350,146 to 2,351,147
_10735
AO353_10740: AO353_10740 - osmotically inducible protein OsmC, at 2,351,389 to 2,351,820
_10740
AO353_10745: AO353_10745 - hypothetical protein, at 2,351,948 to 2,352,181
_10745
Group
Condition
AO353
_10725
AO353
_10730
AO353
_10735
AO353
_10740
AO353
_10745
carbon source
acetate (C)
-0.9
-3.0
+0.1
-0.6
-0.2
carbon source
L-Leucine (C)
-2.1
-1.0
-0.3
-0.0
-0.3
carbon source
a-Ketoglutaric (C)
-1.3
-1.0
-0.2
-0.1
-0.4
stress
methylglyoxal 0.009 vol%
-1.5
-1.8
-0.0
+0.4
-0.1
carbon source
Fumarate (C)
-0.6
-2.2
+0.0
-0.2
+0.1
nitrogen source
L-Citrulline (N)
+0.1
-2.0
-0.1
-0.3
-0.3
carbon source
a-Ketoglutaric (C)
-0.9
-1.3
+0.1
-0.1
-0.1
motility
outer cut, LB soft agar motility assay
+0.0
-0.8
-0.6
-0.4
-0.7
carbon source
pyruvate (C)
-2.4
-0.1
+0.1
-0.0
+0.1
carbon source
Glycerol (C)
-0.8
-1.4
+0.1
-0.1
-0.1
pH
Minimal media pH7
-0.7
-1.4
+0.2
+0.3
-0.6
pH
Minimal media pH8
+0.1
-1.8
+0.1
+0.0
-0.3
stress
copper (II) chloride 2.5 mM
-0.2
-1.8
+0.2
+0.1
+0.1
carbon source
L-Serine (C)
-2.0
+0.1
-0.1
+0.2
+0.5
stress
nitrate 200 mM
+0.8
-1.9
-0.2
-0.1
+0.1
stress
Sisomicin 0.008 mg/ml
-1.5
-0.1
+0.3
-0.2
+0.4
carbon source
L-Citrulline
+0.7
-1.3
+0.1
+0.3
-0.9
stress
Paraquat dichloride 0.032 mg/mL
-1.2
+0.8
+0.0
-0.4
+0.0
motility
outer cut, LB soft agar motility assay
-0.4
-1.4
+0.4
-0.1
+0.7
stress
Doxycycline hyclate 0.0002 mg/ml
-0.8
-0.7
+0.1
+0.1
+0.7
carbon source
D-Glucose
-1.1
+1.0
-0.1
+0.1
-0.5
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
-1.5
+1.0
-0.1
+0.0
+0.0
carbon source
L-Phenylalanine (C)
+0.8
+0.2
-0.0
-0.5
-0.9
carbon source
acetate (C)
+1.0
+0.0
-0.3
-0.4
-0.7
stress
Thallium(I) acetate 0.008 mg/ml
+0.6
-1.2
-0.2
-0.1
+0.5
motility
outer cut, LB soft agar motility assay
+0.6
-1.7
-0.1
-0.3
+1.0
pH
Minimal media pH9
+1.0
+1.1
-0.0
-0.6
-1.0
stress
acetate 68 mM
+1.9
-0.5
-0.3
-0.1
+0.2
carbon source
L-Ornithine
+0.9
+1.0
-0.0
+0.3
-0.5
carbon source
D-Glucose
+0.9
+1.3
-0.0
+0.2
-0.2
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