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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_10615 and AO353_10620 are separated by 16 nucleotides
AO353_10620 and AO353_10625 are separated by 178 nucleotides
AO353_10625 and AO353_10630 are separated by 23 nucleotides
AO353_10630 and AO353_10635 overlap by 4 nucleotides
AO353_10615: AO353_10615 - pilus assembly protein PilZ, at 2,328,451 to 2,328,690
_10615
AO353_10620: AO353_10620 - hypothetical protein, at 2,328,707 to 2,329,021
_10620
AO353_10625: AO353_10625 - potassium transporter peripheral membrane component, at 2,329,200 to 2,330,573
_10625
AO353_10630: AO353_10630 - 16S rRNA methyltransferase, at 2,330,597 to 2,331,907
_10630
AO353_10635: AO353_10635 - methionyl-tRNA formyltransferase, at 2,331,904 to 2,332,863
_10635
Group
Condition
AO353
_10615
AO353
_10620
AO353
_10625
AO353
_10630
AO353
_10635
stress
Lomefloxacin 0.001 mM
-0.3
-0.5
-0.2
-2.2
N.D.
stress
1-ethyl-3-methylimidazolium chloride 170 mM
-0.1
+0.1
-2.1
-1.2
N.D.
carbon source
L-Citrulline
-0.2
-1.2
-0.3
-1.6
N.D.
stress
Thallium(I) acetate 0.016 mg/ml
-0.8
-2.0
+0.2
-0.5
N.D.
stress
Doxycycline hyclate 0.0006 mg/ml
+0.3
+0.0
-0.6
-2.5
N.D.
stress
Sisomicin 0.008 mg/ml
-0.3
-0.1
-1.6
-0.6
N.D.
carbon source
L-Leucine (C)
-0.2
-0.4
-0.4
-1.4
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
-0.7
-1.4
+0.3
-0.6
N.D.
stress
Cisplatin 0.006 mg/ml
-0.4
-0.5
+0.0
-1.4
N.D.
motility
outer cut, LB soft agar motility assay
-0.4
-0.3
-0.1
-1.4
N.D.
stress
Gentamicin 0.006 mg/ml
-0.1
+0.1
-1.0
-1.1
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
-0.3
-1.6
+0.2
-0.4
N.D.
motility
outer cut, LB soft agar motility assay
+0.3
-0.6
-0.5
-1.3
N.D.
carbon source
D-Trehalose (C)
-0.0
-0.2
-0.2
-1.5
N.D.
carbon source
L-Asparagine (C)
-0.1
+0.0
-0.2
-1.5
N.D.
stress
Doxycycline hyclate 0.0002 mg/ml
-0.0
-0.2
-0.4
-1.3
N.D.
carbon source
L-Citrulline
-0.6
+0.1
-0.3
-1.0
N.D.
stress
Benzalkonium Chloride 0.01 mg/ml
+0.1
+0.3
-0.6
-1.5
N.D.
stress
Spectinomycin 0.2 mg/ml
+0.4
+0.0
-0.9
-1.2
N.D.
stress
Thallium(I) acetate 0.016 mg/ml
-0.1
-1.5
+0.2
-0.1
N.D.
stress
Fusidic 0.125 mg/ml
-0.1
-0.4
+0.5
-1.4
N.D.
carbon source
D-Glucose
+0.2
+0.4
-0.2
-1.2
N.D.
carbon source
L-Citrulline
+0.4
+0.5
-0.3
-1.0
N.D.
carbon source
L-Ornithine
+0.8
+0.2
-0.2
-1.1
N.D.
carbon source
propionate (C)
-0.5
-0.8
+0.1
+1.0
N.D.
carbon source
L-Ornithine
+0.8
+0.6
-0.2
-1.3
N.D.
stress
nitrate 200 mM
+0.1
-0.0
+1.0
-1.1
N.D.
carbon source
acetate (C)
+0.6
+0.7
-0.0
-1.0
N.D.
stress
methylglyoxal 0.009 vol%
-0.5
-0.0
+1.3
-0.0
N.D.
denitrifying
Nitrate reduction, replicate C
+0.9
-0.2
-0.2
+0.5
N.D.
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