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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_10525 and AO353_10530 are separated by 33 nucleotides
AO353_10530 and AO353_10535 are separated by 373 nucleotides
AO353_10535 and AO353_10540 are separated by 244 nucleotides
AO353_10540 and AO353_10545 overlap by 4 nucleotides
AO353_10525: AO353_10525 - hypothetical protein, at 2,309,616 to 2,309,810
_10525
AO353_10530: AO353_10530 - serine hydroxymethyltransferase, at 2,309,844 to 2,311,142
_10530
AO353_10535: AO353_10535 - MFS transporter, at 2,311,516 to 2,312,733
_10535
AO353_10540: AO353_10540 - aminobenzoate oxygenase, at 2,312,978 to 2,313,940
_10540
AO353_10545: AO353_10545 - ferredoxin, at 2,313,937 to 2,314,995
_10545
Group
Condition
AO353
_10525
AO353
_10530
AO353
_10535
AO353
_10540
AO353
_10545
carbon source
L-Ornithine
-0.8
-0.2
-0.3
-0.1
-0.0
carbon source
L-Ornithine
-0.4
-0.1
-0.5
-0.1
-0.2
carbon source
L-Citrulline
-0.7
-0.2
-0.2
+0.0
-0.3
carbon source
L-Citrulline
-0.1
-0.2
-0.5
-0.2
-0.3
carbon source
L-Ornithine
-0.3
-0.5
-0.3
-0.1
+0.0
carbon source
L-Ornithine
-0.4
-0.5
-0.1
-0.0
-0.1
motility
outer cut, LB soft agar motility assay
+0.1
-0.4
-0.7
+0.1
-0.2
stress
Fusidic 0.125 mg/ml
-0.2
-0.0
-0.4
-0.0
-0.2
stress
Sisomicin 0.008 mg/ml
-0.2
+0.3
-0.1
-0.2
-0.2
carbon source
acetate (C)
-0.3
-0.0
-0.3
+0.0
+0.2
nitrogen source
Gly-Glu (N)
+0.2
-0.1
+0.0
+0.1
-0.5
nitrogen source
Parabanic Acid (N)
+0.4
+0.0
-0.4
-0.1
-0.2
stress
Cisplatin 0.006 mg/ml
+0.3
-0.4
-0.3
+0.2
+0.0
stress
Nalidixic 0.004 mg/ml
-0.5
-0.0
+0.3
+0.2
+0.1
carbon source
L-Alanine (C)
+0.3
-0.1
-0.3
+0.0
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
-0.3
+0.2
+0.2
+0.1
-0.0
survival
4C survival; 672 hrs
+0.3
-0.2
-0.0
+0.1
+0.2
stress
Thallium(I) acetate 0.008 mg/ml
+0.0
+0.0
+0.3
+0.3
-0.2
lb
LB
-0.4
-0.0
+0.2
+0.4
+0.4
motility
outer cut, LB soft agar motility assay
+0.4
-0.4
+0.3
+0.2
+0.3
lb
LB
+0.1
-0.0
+0.2
+0.3
+0.3
stress
acetate 68 mM
-0.2
-0.2
+0.8
+1.0
+1.1
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.1
-0.1
+0.9
+1.1
+1.0
stress
Cholin acetate 38 mM
-0.2
-0.1
+1.1
+1.4
+1.5
stress
acetate 17 mM
-0.0
-0.1
+0.6
+1.7
+1.7
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-0.3
-0.1
+0.8
+1.9
+2.2
stress
1-ethyl-3-methylimidazolium acetate 15 mM
-0.2
-0.2
+0.7
+2.0
+2.2
stress
acetate 34 mM
-0.2
-0.0
+1.1
+2.0
+2.3
stress
Cholin acetate 19 mM
-0.3
-0.0
+1.1
+2.3
+2.3
stress
Cholin acetate 10 mM
+0.1
-0.1
+1.2
+2.3
+2.6
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AO353_10530
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AO353_10535
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