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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_10230 and AO353_10235 overlap by 7 nucleotides
AO353_10235 and AO353_10240 are separated by 429 nucleotides
AO353_10240 and AO353_10245 overlap by 4 nucleotides
AO353_10245 and AO353_10250 are separated by 3 nucleotides
AO353_10230: AO353_10230 - glycosyltransferase, at 2,239,239 to 2,240,543
_10230
AO353_10235: AO353_10235 - glycosyltransferase, at 2,240,537 to 2,242,102
_10235
AO353_10240: AO353_10240 - NAD-dependent dehydratase, at 2,242,532 to 2,243,446
_10240
AO353_10245: AO353_10245 - GDP-mannose 4,6-dehydratase, at 2,243,443 to 2,244,414
_10245
AO353_10250: AO353_10250 - mannose-1-phosphate guanylyltransferase, at 2,244,418 to 2,245,860
_10250
Group
Condition
AO353
_10230
AO353
_10235
AO353
_10240
AO353
_10245
AO353
_10250
carbon source
L-Ornithine
-2.4
-2.3
-1.5
-0.2
-0.3
carbon source
L-Ornithine
-2.3
-2.5
-0.8
-0.2
-0.0
carbon source
L-Ornithine
-2.5
-2.3
-0.3
+0.2
-0.2
carbon source
D-Glucose
-2.3
-2.5
-0.4
+0.2
-0.1
carbon source
L-Citrulline
-2.5
-2.2
+0.1
-0.2
-0.2
carbon source
L-Citrulline
-2.2
-2.5
-0.4
+0.2
-0.0
carbon source
L-Citrulline
-2.0
-2.2
-0.4
+0.2
+0.0
carbon source
L-Ornithine
-1.8
-1.8
-0.4
-0.1
-0.2
carbon source
L-Citrulline
-1.6
-2.5
-0.1
+0.0
-0.2
carbon source
D-Glucose
-2.0
-2.1
+0.3
+0.3
+0.1
carbon source
L-Leucine (C)
-0.2
-0.4
-1.0
-0.1
-0.2
carbon source
L-Valine (C)
-0.3
-0.2
-0.7
-0.2
-0.3
carbon source
acetate (C)
+0.0
-0.2
-1.4
+0.1
-0.2
carbon source
Ethanol (C)
-0.7
-0.4
-0.3
-0.0
-0.1
carbon source
L-Phenylalanine (C)
-0.0
-0.2
-1.3
+0.1
-0.0
carbon source
Uridine (C)
-0.1
-0.1
-0.9
-0.4
-0.0
carbon source
Ethanol (C)
-0.7
-0.3
-0.4
+0.2
-0.1
carbon source
L-Citrulline (C)
-0.2
-0.2
-0.9
-0.1
+0.0
anaerobic
N1B4wt with N2E3m denitrifying replicate C
-0.7
-0.5
+0.2
-0.0
+0.1
carbon source
L-Tryptophan (C)
-0.2
-0.2
+0.6
-0.2
-0.3
carbon source
D-Ribose (C)
+0.5
+0.6
+0.1
-0.3
+0.1
survival
4C survival; 672 hrs
+0.0
-0.3
+0.5
+0.7
+0.1
carbon source
propionate (C)
+0.9
+0.8
-0.5
-0.2
+0.2
carbon source
L-Aspartic Acid (C)
+0.4
+0.2
+0.7
-0.2
+0.2
stress
Fusidic 0.125 mg/ml
+0.4
+0.8
+0.2
+0.0
+0.1
carbon source
propionate (C)
+1.0
+1.0
-0.2
+0.0
+0.4
denitrifying
Nitrate reduction, replicate C
+1.4
+1.5
-0.7
+0.3
-0.2
stress
Rifampicin 0.005 mg/ml
+0.7
+1.3
+0.5
+0.3
+0.3
denitrifying
Nitrate reduction, replicate B
+1.6
+1.7
-0.3
+0.2
+0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
+1.4
+1.8
+0.1
+0.1
-0.1
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