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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_09820 and AO353_09825 are separated by 85 nucleotides
AO353_09825 and AO353_09830 are separated by 188 nucleotides
AO353_09830 and AO353_09835 are separated by 34 nucleotides
AO353_09835 and AO353_09840 are separated by 201 nucleotides
AO353_09820: AO353_09820 - hypothetical protein, at 2,146,373 to 2,146,852
_09820
AO353_09825: AO353_09825 - integration host factor, at 2,146,938 to 2,147,213
_09825
AO353_09830: AO353_09830 - pyridine nucleotide-disulfide oxidoreductase, at 2,147,402 to 2,148,550
_09830
AO353_09835: AO353_09835 - rubredoxin, at 2,148,585 to 2,148,755
_09835
AO353_09840: AO353_09840 - chorismate--pyruvate lyase, at 2,148,957 to 2,149,520
_09840
Group
Condition
AO353
_09820
AO353
_09825
AO353
_09830
AO353
_09835
AO353
_09840
pH
Minimal media pH9
-0.6
N.D.
+0.3
+0.6
-3.0
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
-0.1
N.D.
+0.5
-2.0
-0.6
stress
Benzalkonium Chloride 0.012 mg/ml
-0.2
N.D.
-0.2
-1.8
+0.3
stress
acetate 68 mM
-0.2
N.D.
-0.0
-0.8
-0.6
stress
Thallium(I) acetate 0.016 mg/ml
+0.1
N.D.
-0.7
-1.0
+0.1
carbon source
acetate (C)
+0.1
N.D.
-0.1
-0.2
-1.3
carbon source
L-Ornithine
-0.1
N.D.
-0.4
+0.2
-1.0
stress
methylglyoxal 0.009 vol%
+0.2
N.D.
-0.5
-1.6
+0.6
carbon source
L-Leucine (C)
+0.3
N.D.
-0.3
-0.3
-0.9
carbon source
butyrate (C)
+0.2
N.D.
+0.0
+0.5
-1.8
stress
Nickel (II) chloride 0.625 mM
-0.4
N.D.
-0.6
+0.3
-0.4
carbon source
L-Ornithine
+0.2
N.D.
-0.5
-1.0
+0.2
stress
Cholin acetate 38 mM
+0.1
N.D.
+0.4
-0.4
-0.9
carbon source
L-Ornithine
-0.0
N.D.
-0.4
+0.4
-0.8
stress
acetate 17 mM
-0.1
N.D.
+0.4
-0.5
-0.5
nitrogen source
Parabanic Acid (N)
-0.5
N.D.
-0.2
-0.8
+0.9
pH
Minimal media pH9
+0.1
N.D.
+0.2
+1.0
-1.7
stress
Paraquat dichloride 0.032 mg/mL
+0.2
N.D.
+0.2
+0.4
-1.1
stress
acetate 34 mM
+0.2
N.D.
+0.5
-0.8
-0.2
stress
Doxycycline hyclate 0.0002 mg/ml
-0.2
N.D.
+0.4
+0.9
-0.6
stress
Lomefloxacin 0.001 mM
-0.5
N.D.
+0.7
+1.0
-0.1
stress
Fusidic 0.125 mg/ml
-0.2
N.D.
+0.3
+1.2
+0.5
stress
Spectinomycin 0.15 mg/ml
+0.0
N.D.
+0.4
+1.0
+0.4
stress
Tetracycline 0.0016 mg/ml
-0.1
N.D.
+0.4
+1.5
+0.7
stress
nitrate 200 mM
+0.0
N.D.
+0.1
+0.6
+1.9
stress
perchlorate 75 mM
-0.3
N.D.
+0.2
+0.3
+2.4
stress
Furfuryl Alcohol 0.25 vol%
+0.3
N.D.
+1.7
+0.7
-0.1
stress
Rifampicin 0.005 mg/ml
+0.0
N.D.
+0.6
+1.2
+0.9
stress
Doxycycline hyclate 0.0006 mg/ml
-0.4
N.D.
+0.7
+1.9
+1.1
stress
Sisomicin 0.008 mg/ml
+0.3
N.D.
+0.6
+0.4
+2.6
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