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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_09685 and AO353_09690 are separated by 696 nucleotides
AO353_09690 and AO353_09695 are separated by 63 nucleotides
AO353_09695 and AO353_09700 are separated by 8 nucleotides
AO353_09700 and AO353_09705 are separated by 246 nucleotides
AO353_09685: AO353_09685 - hypothetical protein, at 2,127,056 to 2,127,514
_09685
AO353_09690: AO353_09690 - hypothetical protein, at 2,128,211 to 2,128,516
_09690
AO353_09695: AO353_09695 - hypothetical protein, at 2,128,580 to 2,129,680
_09695
AO353_09700: AO353_09700 - hypothetical protein, at 2,129,689 to 2,130,174
_09700
AO353_09705: AO353_09705 - hypothetical protein, at 2,130,421 to 2,131,491
_09705
Group
Condition
AO353
_09685
AO353
_09690
AO353
_09695
AO353
_09700
AO353
_09705
pH
Minimal media pH7
-0.1
-1.5
+0.1
-0.4
-0.3
carbon source
L-Leucine (C)
+0.1
-1.8
+0.1
+0.1
-0.6
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.7
-0.8
-0.4
-0.2
+0.1
stress
Cisplatin 0.006 mg/ml
-0.2
-0.4
+0.0
-0.7
-0.6
motility
outer cut, LB soft agar motility assay
+0.4
-0.4
+0.2
-0.7
-1.4
carbon source
L-Valine (C)
-0.4
-0.1
-0.6
-0.6
-0.0
carbon source
L-Ornithine
+0.0
-0.2
+0.1
-1.8
+0.2
carbon source
L-Aspartic Acid (C)
-0.3
-0.4
+0.1
-0.9
-0.2
carbon source
propionate (C)
+0.1
-0.4
-0.1
-1.1
-0.2
survival
4C survival; 360 hrs
-0.0
-0.2
+0.1
-0.8
-0.6
carbon source
Ethanol (C)
-0.4
-0.3
+0.2
-1.1
+0.2
stress
Doxycycline hyclate 0.0002 mg/ml
+0.1
-0.1
-0.3
-0.1
-1.0
nitrogen source
Thymine (N)
-0.1
+0.1
+0.2
-0.4
-0.8
denitrifying
Nitrate reduction, replicate B
+0.1
-1.0
-0.1
-0.3
+0.2
pH
Minimal media pH9
+0.2
-1.4
+0.3
-0.8
+0.7
stress
Paraquat dichloride 0.032 mg/mL
+0.1
-0.2
+0.1
+0.1
-1.2
stress
nitrate 200 mM
+0.3
+0.0
+0.1
-0.7
-0.5
stress
Nickel (II) chloride 0.625 mM
+0.0
-0.6
-0.3
-0.3
+0.6
carbon source
L-Malic (C)
-0.0
+0.6
+0.1
-0.2
-0.8
pH
Minimal media pH6
+0.2
-0.5
+0.2
-0.6
+0.3
nitrogen source
Parabanic Acid (N)
+0.2
-1.1
-0.2
-0.2
+1.0
survival
4C survival; 672 hrs
+0.2
-0.0
+0.1
-0.9
+0.4
nitrogen source
Inosine (N)
+0.1
-1.0
+0.0
-0.0
+0.8
pH
Minimal media pH8
+0.2
-0.6
+0.1
-0.5
+0.7
nitrogen source
L-Serine (N)
-0.1
-0.8
-0.1
+0.1
+0.8
carbon source
L-Ornithine
-0.0
-1.4
+0.0
-0.3
+1.9
stress
Cholin acetate 19 mM
+0.1
-1.0
+0.1
+0.1
+0.8
carbon source
acetate (C)
+0.2
+0.7
-0.2
+0.1
+0.4
motility
outer cut, LB soft agar motility assay
-0.1
+1.4
+0.4
-1.4
+1.4
motility
outer cut, LB soft agar motility assay
+0.3
+0.4
+0.5
+0.3
+0.7
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AO353_09690
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AO353_09695
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AO353_09705
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