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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_09150 and AO353_09155 overlap by 29 nucleotides
AO353_09155 and AO353_09160 are separated by 156 nucleotides
AO353_09160 and AO353_09165 are separated by 61 nucleotides
AO353_09165 and AO353_09170 are separated by 149 nucleotides
AO353_09150: AO353_09150 - cytochrome C2, at 2,010,247 to 2,010,600
_09150
AO353_09155: AO353_09155 - amino acid dehydrogenase, at 2,010,572 to 2,011,876
_09155
AO353_09160: AO353_09160 - AsnC family transcriptional regulator, at 2,012,033 to 2,012,521
_09160
AO353_09165: AO353_09165 - Fe-S oxidoreductase, at 2,012,583 to 2,012,936
_09165
AO353_09170: AO353_09170 - FAD-dependent oxidoreductase, at 2,013,086 to 2,014,399
_09170
Group
Condition
AO353
_09150
AO353
_09155
AO353
_09160
AO353
_09165
AO353
_09170
carbon source
L-Alanine (C)
-2.9
-3.2
-3.4
+0.3
-0.1
carbon source
D-Alanine (C)
+0.4
-3.9
-3.4
+0.2
-0.1
nitrogen source
L-Tryptophan (N)
-1.0
-3.7
-1.6
-0.2
-0.2
nitrogen source
D-Alanine (N)
+0.5
-3.8
-2.5
-0.0
-0.1
carbon source
L-Tryptophan (C)
+0.2
-3.7
-2.6
+0.4
+0.1
carbon source
L-Valine (C)
-1.1
-3.1
-0.8
+0.2
-0.1
nitrogen source
Uridine (N)
-0.9
-3.1
-0.5
+0.0
+0.0
pH
Minimal media pH9
+0.1
-2.9
-0.5
-0.0
-0.7
motility
outer cut, LB soft agar motility assay
-1.6
-1.0
+0.2
-0.9
-0.3
pH
Minimal media pH9
+0.6
-2.7
-0.8
-0.1
-0.6
carbon source
Putrescine (C)
-0.0
-2.3
-1.1
-0.3
+0.1
nitrogen source
Thymine (N)
+0.2
-3.0
-0.2
-0.3
+0.1
stress
Paraquat dichloride 0.032 mg/mL
-0.8
-0.9
-0.6
-0.3
-0.4
stress
Cisplatin 0.006 mg/ml
-2.5
+0.5
-0.2
+0.1
-0.2
nitrogen source
Parabanic Acid (N)
+0.1
-2.6
+0.1
+0.0
+0.2
nitrogen source
Adenine (N)
-0.9
-1.0
-0.0
+0.1
-0.2
nitrogen source
Adenosine (N)
-0.4
-1.5
-0.2
+0.2
-0.1
carbon source
D-Serine (C)
-0.8
-1.1
+0.3
-0.0
-0.0
carbon source
Uridine (C)
+0.3
-1.2
-0.2
-0.2
+0.1
motility
outer cut, LB soft agar motility assay
+0.3
-0.8
+0.2
-0.3
-0.6
nitrogen source
L-Serine (N)
-0.5
-1.1
+0.4
+0.1
-0.1
carbon source
acetate (C)
-0.3
-1.0
-0.2
-0.2
+0.6
carbon source
L-Citrulline
-1.5
+0.3
+0.4
+0.2
+0.0
stress
Doxycycline hyclate 0.0006 mg/ml
+0.5
+0.7
-0.1
-0.3
-0.4
stress
Furfuryl Alcohol 0.25 vol%
-0.1
+1.0
+0.4
-0.3
-0.3
stress
Sisomicin 0.008 mg/ml
-0.2
+1.0
-0.0
+0.6
+0.2
stress
perchlorate 75 mM
-0.0
+1.4
+0.3
-0.1
+0.1
stress
methylglyoxal 0.009 vol%
+1.1
+0.9
+0.1
-0.1
-0.3
stress
Lomefloxacin 0.001 mM
+0.8
+1.0
+0.1
+0.4
-0.1
stress
Cisplatin 0.006 mg/ml
+1.6
+0.7
+0.3
+0.1
-0.1
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