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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_09100 and AO353_09105 are separated by 190 nucleotides
AO353_09105 and AO353_09110 are separated by 152 nucleotides
AO353_09110 and AO353_09115 are separated by 98 nucleotides
AO353_09115 and AO353_09120 are separated by 268 nucleotides
AO353_09100: AO353_09100 - chemotaxis protein, at 1,996,388 to 1,998,364
_09100
AO353_09105: AO353_09105 - LysR family transcriptional regulator, at 1,998,555 to 1,999,475
_09105
AO353_09110: AO353_09110 - MATE family efflux transporter, at 1,999,628 to 2,001,034
_09110
AO353_09115: AO353_09115 - diguanylate cyclase, at 2,001,133 to 2,002,797
_09115
AO353_09120: AO353_09120 - ATP-dependent DNA helicase Rep, at 2,003,066 to 2,005,075
_09120
Group
Condition
AO353
_09100
AO353
_09105
AO353
_09110
AO353
_09115
AO353
_09120
motility
outer cut, LB soft agar motility assay
-0.0
+0.0
-0.6
-2.9
N.D.
stress
perchlorate 75 mM
+0.1
-0.3
-0.3
-1.3
N.D.
motility
outer cut, LB soft agar motility assay
-0.0
-0.2
-0.1
-1.5
N.D.
stress
nitrate 200 mM
-0.2
-0.2
-0.2
-1.3
N.D.
motility
outer cut, LB soft agar motility assay
-0.1
-0.3
-0.2
-1.2
N.D.
pH
Minimal media pH9
-0.2
-0.3
-0.3
-0.9
N.D.
carbon source
L-Valine (C)
-0.2
-0.5
+0.0
-0.9
N.D.
carbon source
L-Ornithine
-0.2
-0.1
-0.3
-1.0
N.D.
carbon source
D-Glucose
-0.3
-0.2
-0.3
-0.5
N.D.
carbon source
L-Citrulline
-0.1
-0.5
-0.2
-0.5
N.D.
carbon source
L-Tryptophan (C)
+0.1
-0.2
-0.1
-0.9
N.D.
nitrogen source
Gly-Glu (N)
+0.1
-0.4
+0.1
-0.7
N.D.
carbon source
L-Alanine (C)
+0.2
-0.1
+0.1
-0.7
N.D.
carbon source
L-Ornithine
-0.0
+0.1
+0.5
-0.8
N.D.
stress
Thallium(I) acetate 0.016 mg/ml
-0.0
+0.7
-0.5
-0.0
N.D.
stress
Cisplatin 0.006 mg/ml
+0.2
+0.6
+0.1
-0.6
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
+0.6
-0.4
+0.1
N.D.
lb
LB
-0.3
+0.3
+0.2
+0.4
N.D.
stress
copper (II) chloride 2.5 mM
+0.3
-0.2
-0.1
+0.7
N.D.
survival
4C survival; 672 hrs
+0.2
-0.2
+0.2
+0.8
N.D.
lb
LB
+0.1
+0.1
+0.3
+0.8
N.D.
stress
Cholin acetate 19 mM
-0.1
-0.0
+0.1
+1.4
N.D.
stress
Cholin acetate 10 mM
+0.1
+0.0
+0.1
+1.2
N.D.
stress
acetate 17 mM
+0.1
+0.0
+0.0
+1.3
N.D.
stress
Cholin acetate 38 mM
-0.0
-0.0
+0.1
+1.5
N.D.
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.1
+0.2
+0.1
+1.3
N.D.
stress
acetate 34 mM
+0.1
-0.0
+0.2
+1.6
N.D.
stress
acetate 68 mM
+0.1
-0.1
+0.4
+1.6
N.D.
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.3
+0.2
-0.0
+1.7
N.D.
stress
1-ethyl-3-methylimidazolium acetate 15 mM
+0.1
+0.2
+0.2
+1.9
N.D.
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