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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_09010 and AO353_09015 are separated by 287 nucleotides
AO353_09015 and AO353_09020 are separated by 184 nucleotides
AO353_09020 and AO353_09025 are separated by 6 nucleotides
AO353_09025 and AO353_09030 are separated by 795 nucleotides
AO353_09010: AO353_09010 - hypothetical protein, at 1,978,344 to 1,978,628
_09010
AO353_09015: AO353_09015 - DNA-binding protein, at 1,978,916 to 1,979,161
_09015
AO353_09020: AO353_09020 - adenylate cyclase, at 1,979,346 to 1,982,195
_09020
AO353_09025: AO353_09025 - nucleoside diphosphate kinase regulator, at 1,982,202 to 1,982,612
_09025
AO353_09030: AO353_09030 - iron donor protein CyaY, at 1,983,408 to 1,983,740
_09030
Group
Condition
AO353
_09010
AO353
_09015
AO353
_09020
AO353
_09025
AO353
_09030
stress
Doxycycline hyclate 0.0006 mg/ml
-1.0
-0.2
-0.0
+0.7
-3.0
stress
Paraquat dichloride 0.032 mg/mL
-0.4
-1.7
-0.1
-0.9
-0.0
carbon source
L-Citrulline
+0.1
-1.0
-0.0
+0.5
-2.7
nitrogen source
Gly-Glu (N)
-0.7
-1.0
-0.1
+0.2
-1.2
denitrifying
Nitrate reduction, replicate B
-0.0
-0.2
+0.0
-0.4
-1.9
motility
outer cut, LB soft agar motility assay
-0.1
-0.2
+1.2
-0.1
-3.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
+0.1
-0.0
+0.3
-2.4
nitrogen source
L-Tryptophan (N)
-0.3
+0.1
-0.0
+0.0
-1.9
stress
Cobalt chloride 0.32 mM
+0.2
-0.3
-0.0
+0.1
-1.9
carbon source
L-Ornithine
-0.5
-0.3
-0.1
+1.1
-2.1
nitrogen source
L-Glutamine (N)
-0.2
+0.0
+0.0
+0.2
-1.9
carbon source
a-Ketoglutaric (C)
-0.3
-0.6
+0.0
+0.2
-1.1
stress
Thallium(I) acetate 0.008 mg/ml
+0.4
-0.4
+0.0
-0.2
-1.3
denitrifying
Nitrate reduction, replicate C
+0.2
+0.3
+0.0
-0.7
-1.1
stress
acetate 68 mM
+0.2
-0.3
-0.1
+0.6
-1.8
stress
Lomefloxacin 0.001 mM
+0.3
-3.1
+0.1
+0.9
+0.5
carbon source
L-Citrulline
+0.4
+0.1
-0.0
+0.3
-2.0
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
-0.6
+0.4
+0.0
+0.3
-1.2
carbon source
acetate (C)
-0.4
-2.0
-0.1
+0.2
+1.2
nitrogen source
Glycine (N)
+0.7
+0.1
-0.1
+0.1
-1.5
carbon source
L-Ornithine
-0.4
-0.7
-0.2
+1.0
-0.2
carbon source
propionate (C)
-0.5
-0.3
+0.1
-0.6
+0.9
survival
4C survival; 672 hrs
+0.1
-0.6
+0.1
+1.8
-1.5
stress
Fusidic 0.125 mg/ml
+0.6
+0.9
+0.1
+0.3
-1.4
survival
4C survival; 192 hrs
-0.2
-0.3
+0.0
+1.1
+0.7
carbon source
L-Citrulline
+0.3
-0.7
-0.2
+1.0
+1.0
pH
Minimal media pH9
-0.6
+0.4
+0.0
+1.0
+0.8
motility
outer cut, LB soft agar motility assay
-0.5
-0.9
+0.8
-0.9
+3.2
stress
Cisplatin 0.006 mg/ml
-0.3
+0.9
+0.2
-0.5
+1.8
carbon source
acetate (C)
+0.0
+0.2
+0.0
+0.6
+2.3
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