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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_08795 and AO353_08800 overlap by 1 nucleotides
AO353_08800 and AO353_08805 are separated by 43 nucleotides
AO353_08805 and AO353_08810 are separated by 151 nucleotides
AO353_08810 and AO353_08815 are separated by 52 nucleotides
AO353_08795: AO353_08795 - multidrug ABC transporter ATP-binding protein, at 1,932,519 to 1,935,242
_08795
AO353_08800: AO353_08800 - hypothetical protein, at 1,935,242 to 1,936,360
_08800
AO353_08805: AO353_08805 - flagellar basal body protein FliL, at 1,936,404 to 1,936,811
_08805
AO353_08810: AO353_08810 - NADPH:quinone oxidoreductase, at 1,936,963 to 1,937,940
_08810
AO353_08815: AO353_08815 - flagellar basal body-associated protein FliL, at 1,937,993 to 1,938,607
_08815
Group
Condition
AO353
_08795
AO353
_08800
AO353
_08805
AO353
_08810
AO353
_08815
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.3
-0.3
-0.5
+0.1
-0.8
carbon source
L-Ornithine
-0.0
-0.0
-0.2
-0.1
-0.7
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.2
-0.3
-0.5
+0.0
-0.1
carbon source
L-Leucine (C)
-0.1
-0.0
+0.2
-0.4
-0.6
carbon source
L-Ornithine
+0.0
+0.1
-0.6
-0.4
-0.0
stress
Spectinomycin 0.2 mg/ml
-0.0
-0.5
+0.2
+0.0
-0.4
stress
Thallium(I) acetate 0.016 mg/ml
-0.1
-0.0
-0.3
-0.4
+0.1
carbon source
L-Tryptophan (C)
+0.1
-0.2
-0.3
-0.0
-0.2
nitrogen source
L-Phenylalanine (N)
+0.1
-0.1
+0.0
-0.3
-0.3
stress
Cholin acetate 19 mM
+0.0
+0.0
-0.6
+0.1
+0.1
stress
Cholin acetate 10 mM
-0.1
+0.2
-0.4
-0.1
+0.2
stress
acetate 34 mM
+0.0
+0.2
-0.5
+0.1
+0.0
stress
Thallium(I) acetate 0.016 mg/ml
-0.1
-0.2
+0.1
-0.2
+0.3
lb
LB
-0.1
+0.1
-0.2
-0.1
+0.2
carbon source
D-Alanine (C)
+0.0
+0.1
+0.3
-0.2
-0.3
survival
4C survival; 672 hrs
+0.1
+0.2
-0.7
+0.3
+0.2
carbon source
pyruvate (C)
+0.0
-0.2
+0.2
-0.1
+0.3
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.1
+0.3
-0.3
+0.1
+0.1
carbon source
L-Isoleucine (C)
+0.0
+0.2
+0.3
+0.2
-0.4
stress
Doxycycline hyclate 0.0006 mg/ml
-0.1
+0.0
+0.2
-0.4
+0.7
stress
Cisplatin 0.006 mg/ml
+0.2
-0.0
+0.2
-0.4
+0.4
stress
Choline Lysine 12 mM
+0.1
+0.3
-0.1
-0.1
+0.4
stress
methylglyoxal 0.009 vol%
+0.2
-0.3
+0.0
+0.1
+0.6
motility
outer cut, LB soft agar motility assay
+0.2
-0.5
+1.1
-0.2
+0.1
stress
Sisomicin 0.008 mg/ml
+0.1
-0.2
+0.3
+0.5
+0.2
motility
outer cut, LB soft agar motility assay
+0.1
+0.1
+1.3
-0.0
-0.4
stress
copper (II) chloride 2.5 mM
-0.0
+0.3
+0.0
+0.3
+0.5
carbon source
acetate (C)
+0.1
+0.4
+0.0
+0.4
+0.1
pH
Minimal media pH9
+0.3
-0.0
+0.2
+0.6
+0.4
motility
outer cut, LB soft agar motility assay
+0.1
-0.4
+1.7
-0.0
+0.2
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