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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_08715 and AO353_08720 are separated by 263 nucleotides
AO353_08720 and AO353_08725 are separated by 154 nucleotides
AO353_08725 and AO353_08730 are separated by 103 nucleotides
AO353_08730 and AO353_08735 are separated by 51 nucleotides
AO353_08715: AO353_08715 - ribonucleotide reductase, at 1,915,078 to 1,915,422
_08715
AO353_08720: AO353_08720 - glycine dehydrogenase, at 1,915,686 to 1,918,559
_08720
AO353_08725: AO353_08725 - aminotransferase DegT, at 1,918,714 to 1,919,853
_08725
AO353_08730: AO353_08730 - glycine cleavage system protein H, at 1,919,957 to 1,920,340
_08730
AO353_08735: AO353_08735 - glycine cleavage system protein T, at 1,920,392 to 1,921,474
_08735
Group
Condition
AO353
_08715
AO353
_08720
AO353
_08725
AO353
_08730
AO353
_08735
carbon source
D-Glucose
-0.0
-0.2
-0.3
-0.5
-0.5
stress
Lomefloxacin 0.001 mM
-0.0
-0.0
-1.4
-0.1
+0.1
stress
Sisomicin 0.008 mg/ml
-0.1
+0.0
-1.1
+0.2
-0.2
stress
methylglyoxal 0.009 vol%
-0.4
+0.0
-0.3
+0.2
-0.6
stress
Benzalkonium Chloride 0.01 mg/ml
+0.2
-0.2
-0.6
+0.1
-0.6
stress
Doxycycline hyclate 0.0006 mg/ml
-0.2
-0.1
-1.4
+0.4
+0.2
carbon source
L-Citrulline
+0.6
-0.3
-0.6
+0.1
-0.7
pH
Minimal media pH9
+0.0
+0.2
+0.2
-0.3
-0.9
stress
Doxycycline hyclate 0.0002 mg/ml
+0.2
-0.1
-0.9
+0.2
-0.1
carbon source
Uridine (C)
-0.3
+0.1
-0.3
+0.3
-0.4
carbon source
Ethanol (C)
-0.6
-0.0
+0.0
+0.5
-0.5
carbon source
L-Valine (C)
-0.1
-0.1
+0.4
+0.7
-1.4
pH
Minimal media pH9
+0.1
+0.1
+0.3
+0.2
-1.2
carbon source
acetate (C)
-0.0
+0.1
+0.2
-1.0
+0.3
stress
Paraquat dichloride 0.032 mg/mL
+0.4
+0.1
-0.3
+0.3
-0.9
carbon source
propionate (C)
-0.2
+0.1
-0.0
-1.0
+1.1
stress
nitrate 200 mM
-0.2
-0.0
+0.1
+1.3
-1.2
stress
perchlorate 75 mM
-0.1
-0.0
+0.3
+0.7
-0.7
stress
Cisplatin 0.006 mg/ml
+0.7
+0.3
-0.5
-0.2
-0.1
stress
acetate 68 mM
+0.2
-0.2
+0.2
+0.9
-0.6
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
+0.2
-0.1
+0.5
-0.5
+0.4
stress
Cholin acetate 10 mM
+0.1
-0.1
+0.0
+1.0
-0.4
motility
outer cut, LB soft agar motility assay
-0.4
-0.0
-0.1
+0.4
+0.8
stress
acetate 17 mM
+0.2
+0.1
+0.2
+0.8
-0.6
stress
1-ethyl-3-methylimidazolium acetate 15 mM
+0.1
+0.0
+0.1
+1.4
-0.7
stress
acetate 34 mM
+0.1
+0.1
-0.1
+1.6
-0.6
carbon source
propionate (C)
+0.2
-0.0
+0.1
-0.2
+1.0
stress
Cholin acetate 38 mM
+0.3
-0.1
+0.1
+1.4
-0.5
stress
1-ethyl-3-methylimidazolium acetate 20 mM
+0.3
-0.1
-0.0
+1.4
-0.3
stress
Cholin acetate 19 mM
+0.4
-0.0
+0.2
+1.7
-0.6
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