Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_08575 and AO353_08580 are separated by 187 nucleotidesAO353_08580 and AO353_08585 are separated by 199 nucleotidesAO353_08585 and AO353_08590 are separated by 53 nucleotidesAO353_08590 and AO353_08595 are separated by 667 nucleotides AO353_08575: AO353_08575 - ABC transporter substrate-binding protein, at 1,883,539 to 1,884,633 _08575 AO353_08580: AO353_08580 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,884,821 to 1,885,915 _08580 AO353_08585: AO353_08585 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data), at 1,886,115 to 1,887,479 _08585 AO353_08590: AO353_08590 - glutamine synthetase, at 1,887,533 to 1,888,891 _08590 AO353_08595: AO353_08595 - Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data), at 1,889,559 to 1,890,935 _08595
Group Condition AO353_08575 AO353_08580 AO353_08585 AO353_08590 AO353_08595
carbon source Putrescine (C) +0.4 -4.0 -2.0 -2.5 -1.2
nitrogen source Putrescine (N) +0.1 -1.2 -0.5 -0.0 -1.9
carbon source acetate (C) +1.1 -0.7 +0.5 -1.7 -2.3
carbon source L-Arginine (C) +0.3 -0.3 -0.1 +0.1 -3.1
carbon source acetate (C) +2.8 -1.5 +0.3 -2.3 -2.1
carbon source L-Arginine (C) -0.1 -0.1 +0.0 +0.2 -2.8
motility outer cut, LB soft agar motility assay -0.5 -0.1 +0.3 -0.5 -0.3
nitrogen source L-Lysine (N) +1.4 -2.0 -0.3 -0.2 +0.1
carbon source propionate (C) -0.6 -0.5 +0.2 +0.3 -0.3
nitrogen source L-Lysine (N) +1.3 -1.7 -0.4 -0.4 +0.3
nitrogen source Adenosine (N) -0.7 -0.6 +0.2 +0.2 +0.2
stress methylglyoxal 0.009 vol% +0.2 -0.2 -0.4 -0.7 +0.4
anaerobic Anaerobic, acetate donor; nitrate and iron +0.2 +0.2 +0.2 -0.8 -0.3
stress Tetracycline 0.0016 mg/ml -0.7 +0.0 -0.3 +0.6 -0.2
carbon source L-Citrulline (C) +0.6 +0.0 +0.2 +0.5 -1.8
stress Rifampicin 0.005 mg/ml -0.6 +0.1 +0.1 +0.5 +0.2
stress Doxycycline hyclate 0.0002 mg/ml -0.5 -0.0 +0.2 +0.6 +0.1
stress Fusidic 0.125 mg/ml -0.4 +0.3 +0.2 +0.5 -0.1
stress Doxycycline hyclate 0.0006 mg/ml -0.5 +0.2 +0.3 +1.0 +0.0
carbon source L-Citrulline +0.3 -0.3 +0.3 +0.6 +0.0
stress acetate 34 mM +0.3 +0.2 -0.1 -0.1 +0.7
stress Cholin acetate 38 mM +0.5 +0.2 +0.1 -0.2 +0.5
stress Cisplatin 0.006 mg/ml +0.7 -0.3 +0.6 +0.5 -0.1
carbon source L-Ornithine -0.0 +0.1 -0.1 +0.2 +1.7
stress Cisplatin 0.006 mg/ml +1.0 -0.0 +0.4 +0.7 +0.6
pH Minimal media pH9 +0.8 -0.2 +0.8 +1.0 +0.3
carbon source L-Ornithine +0.1 +0.2 +0.2 +0.1 +2.3
pH Minimal media pH9 +1.3 -0.4 +0.9 +1.1 +0.4
carbon source L-Ornithine -0.4 +0.5 +0.2 -0.3 +3.5
carbon source L-Ornithine -0.3 +0.2 +0.1 -0.1 +4.6
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