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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_08560 and AO353_08565 overlap by 4 nucleotides
AO353_08565 and AO353_08570 overlap by 4 nucleotides
AO353_08570 and AO353_08575 are separated by 71 nucleotides
AO353_08575 and AO353_08580 are separated by 187 nucleotides
AO353_08560: AO353_08560 - spermidine/putrescine ABC transporter permease, at 1,880,521 to 1,881,411
_08560
AO353_08565: AO353_08565 - spermidine/putrescine ABC transporter permease, at 1,881,408 to 1,882,328
_08565
AO353_08570: AO353_08570 - transporter, at 1,882,325 to 1,883,467
_08570
AO353_08575: AO353_08575 - ABC transporter substrate-binding protein, at 1,883,539 to 1,884,633
_08575
AO353_08580: AO353_08580 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,884,821 to 1,885,915
_08580
Group
Condition
AO353
_08560
AO353
_08565
AO353
_08570
AO353
_08575
AO353
_08580
carbon source
Putrescine (C)
-1.1
-3.2
-3.8
+0.4
-4.0
pH
Minimal media pH9
-2.8
-2.4
-1.7
+0.8
-0.2
nitrogen source
L-Lysine (N)
-1.8
-1.8
-1.6
+1.3
-1.7
nitrogen source
L-Lysine (N)
-1.4
-1.6
-1.5
+1.4
-2.0
pH
Minimal media pH9
-2.8
-2.0
-1.2
+1.3
-0.4
nitrogen source
Adenosine (N)
-1.3
-1.1
-1.0
-0.7
-0.6
stress
Tetracycline 0.0016 mg/ml
-0.8
-1.0
-0.8
-0.7
+0.0
stress
Doxycycline hyclate 0.0006 mg/ml
-0.5
-0.8
-1.7
-0.5
+0.2
carbon source
propionate (C)
-0.5
-0.9
-0.7
-0.6
-0.5
nitrogen source
Putrescine (N)
-0.4
-0.6
-1.0
+0.1
-1.2
stress
Lomefloxacin 0.001 mM
-0.7
-0.8
-0.9
-0.5
-0.0
stress
Doxycycline hyclate 0.0002 mg/ml
-0.9
-0.6
-0.7
-0.5
-0.0
carbon source
L-Valine (C)
-1.8
-0.6
-0.4
+0.2
-0.1
stress
Spectinomycin 0.15 mg/ml
-1.0
-0.5
-0.6
-0.3
-0.1
stress
Spectinomycin 0.2 mg/ml
-1.0
-0.7
-0.2
-0.4
-0.3
stress
Rifampicin 0.005 mg/ml
-0.4
-0.8
-0.7
-0.6
+0.1
carbon source
D-Mannose (C)
-0.6
-0.6
-0.4
-0.3
-0.4
carbon source
propionate (C)
-0.3
-0.5
-0.4
-0.4
-0.4
stress
Cisplatin 0.006 mg/ml
-0.8
-0.6
-1.0
+0.7
-0.3
stress
Tetracycline 0.0008 mg/ml
-0.6
-0.6
-0.3
-0.5
-0.0
stress
sodium fluoride 6.25 mM
-0.6
-0.6
-0.3
-0.2
-0.1
nitrogen source
Parabanic Acid (N)
-0.6
-0.5
-0.2
-0.0
-0.4
stress
Cisplatin 0.006 mg/ml
-1.5
-0.2
-0.9
+1.0
-0.0
stress
Fusidic 0.125 mg/ml
-0.1
-0.4
-0.6
-0.4
+0.3
carbon source
acetate (C)
-0.6
-0.7
-0.7
+2.8
-1.5
carbon source
acetate (C)
-0.6
-0.1
+0.2
+1.1
-0.7
stress
acetate 34 mM
+0.5
+0.3
+0.4
+0.3
+0.2
stress
Cholin acetate 19 mM
+0.5
+0.4
+0.6
+0.4
-0.0
stress
Cholin acetate 38 mM
+0.1
+0.7
+0.6
+0.5
+0.2
stress
acetate 68 mM
+0.6
+0.5
+0.5
+0.4
+0.1
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