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Gene
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Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_08185 and AO353_08190 are separated by 24 nucleotides
AO353_08190 and AO353_08195 overlap by 4 nucleotides
AO353_08195 and AO353_08200 overlap by 4 nucleotides
AO353_08200 and AO353_08205 are separated by 9 nucleotides
AO353_08185: AO353_08185 - methionine biosynthesis protein MetW, at 1,803,291 to 1,803,911
_08185
AO353_08190: AO353_08190 - homoserine acetyltransferase, at 1,803,936 to 1,804,370
_08190
AO353_08195: AO353_08195 - non-canonical purine NTP pyrophosphatase, at 1,804,367 to 1,804,963
_08195
AO353_08200: AO353_08200 - coproporphyrinogen III oxidase, at 1,804,960 to 1,806,162
_08200
AO353_08205: AO353_08205 - hypothetical protein, at 1,806,172 to 1,806,495
_08205
Group
Condition
AO353
_08185
AO353
_08190
AO353
_08195
AO353
_08200
AO353
_08205
carbon source
D-Lactate (C)
-4.5
+0.0
-0.5
-0.1
-0.2
pH
Minimal media pH8
-4.4
+0.0
-0.1
-0.3
-0.2
carbon source
L-Asparagine (C)
-2.9
-0.3
-1.0
-0.5
-0.2
nitrogen source
L-Tryptophan (N)
-4.6
-0.0
-0.2
-0.3
+0.1
carbon source
a-Ketoglutaric (C)
-4.6
+0.0
-0.0
-0.2
+0.0
nitrogen source
L-Arginine (N)
-3.9
-0.0
-0.1
-0.2
-0.6
carbon source
D-Lactate (C)
-4.5
-0.0
+0.1
-0.2
-0.2
carbon source
L-Isoleucine (C)
-3.7
+0.0
-0.7
-0.0
-0.4
pH
Minimal media pH8
-4.3
+0.0
-0.3
-0.0
-0.1
carbon source
succinate (C)
-4.4
-0.0
-0.3
+0.0
+0.0
nitrogen source
L-Citrulline (N)
-4.1
+0.1
-0.5
+0.2
-0.2
nitrogen source
L-tyrosine (N)
-4.3
-0.0
-0.2
+0.1
+0.0
pH
Minimal media pH9
-4.5
-0.1
+0.5
+0.1
-0.4
carbon source
a-Ketoglutaric (C)
-4.4
-0.1
+0.0
-0.1
+0.2
nitrogen source
Adenosine (N)
-4.3
-0.3
-0.3
+0.1
+0.3
nitrogen source
Ammonium chloride (N)
-4.2
-0.2
+0.2
-0.1
+0.2
nitrogen source
nitrate (N)
-3.9
+0.2
-0.6
+0.1
+0.1
nitrogen source
L-Histidine (N)
-4.2
-0.1
+0.4
+0.0
-0.1
carbon source
L-Malic (C)
-4.1
-0.0
+0.4
+0.0
-0.2
pH
Minimal media pH6
-4.0
-0.1
+0.3
-0.1
+0.3
carbon source
D-Fructose (C)
-4.1
-0.0
+0.2
+0.2
+0.2
carbon source
Carnitine Hydrochloride (C)
-4.1
+0.1
+0.2
+0.1
+0.4
nitrogen source
NAG (N)
-3.5
-0.2
+0.1
-0.4
+0.5
nitrogen source
Carnitine Hydrochloride (N)
-4.2
+0.1
+0.4
+0.1
+0.3
carbon source
L-Arginine (C)
-4.0
+0.2
+0.5
+0.2
-0.1
carbon source
L-Citrulline
-3.1
+0.7
+0.4
+0.2
-0.3
carbon source
L-Citrulline
-3.1
+0.7
+0.1
+0.4
+0.4
carbon source
L-Ornithine
-3.4
+0.2
+1.1
+0.2
+0.6
stress
Sisomicin 0.008 mg/ml
+0.3
+0.9
+1.7
+2.3
-0.0
stress
Lomefloxacin 0.001 mM
+0.3
+0.7
+1.8
+2.5
+0.2
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