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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_08085 and AO353_08090 are separated by 38 nucleotides
AO353_08090 and AO353_08095 are separated by 186 nucleotides
AO353_08095 and AO353_08100 are separated by 10 nucleotides
AO353_08100 and AO353_08105 are separated by 57 nucleotides
AO353_08085: AO353_08085 - histidine kinase, at 1,780,985 to 1,786,927
_08085
AO353_08090: AO353_08090 - chemotaxis protein, at 1,786,966 to 1,789,026
_08090
AO353_08095: AO353_08095 - protein PilI, at 1,789,213 to 1,789,752
_08095
AO353_08100: AO353_08100 - chemotaxis protein CheY, at 1,789,763 to 1,790,128
_08100
AO353_08105: AO353_08105 - pilus assembly protein PilG, at 1,790,186 to 1,790,590
_08105
Group
Condition
AO353
_08085
AO353
_08090
AO353
_08095
AO353
_08100
AO353
_08105
stress
Sisomicin 0.008 mg/ml
-1.6
-0.1
-1.7
-1.9
-0.9
survival
4C survival; 672 hrs
-1.4
-1.0
-0.8
-1.3
-1.5
stress
Gentamicin 0.006 mg/ml
-1.0
-0.3
-0.9
-2.2
-0.7
stress
Spectinomycin 0.2 mg/ml
-0.8
-0.4
-0.9
-1.7
-1.2
carbon source
acetate (C)
-0.8
+0.1
-0.6
-1.6
-0.5
carbon source
D,L-Lactate (C)
-0.6
-0.1
-0.4
-1.6
-0.5
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-0.3
-0.6
-0.1
-0.7
-1.2
carbon source
L-Serine (C)
-0.8
-0.4
-0.5
-0.9
-0.3
carbon source
acetate (C)
-0.7
-0.2
-0.1
-1.4
-0.4
carbon source
D-Trehalose (C)
-0.7
+0.1
-0.4
-1.1
-0.2
stress
Spectinomycin 0.15 mg/ml
-0.7
-0.0
-0.1
-1.0
-0.3
carbon source
a-Ketoglutaric (C)
-0.5
-0.1
-0.3
-0.8
-0.5
carbon source
L-Ornithine
-0.2
-0.0
+0.0
-1.9
-0.0
carbon source
D-Lactate (C)
-0.5
+0.1
-0.3
-0.8
-0.7
carbon source
L-Citrulline
-0.2
-0.4
-0.4
-1.0
+0.2
carbon source
butyrate (C)
-0.5
+0.4
+0.0
-1.3
-0.4
carbon source
L-Asparagine (C)
-0.4
+0.3
-0.3
-0.6
-0.7
carbon source
succinate (C)
-0.3
+0.2
-0.1
-1.0
-0.6
stress
Doxycycline hyclate 0.0006 mg/ml
+0.1
-0.7
-0.8
-0.4
+0.1
carbon source
L-Valine (C)
-0.1
-0.5
+0.3
-1.2
+0.0
stress
Lomefloxacin 0.001 mM
+0.1
-0.2
+0.4
-0.5
-1.1
stress
Cholin acetate 38 mM
-0.3
-0.3
-0.4
+0.7
-0.5
carbon source
propionate (C)
-0.5
+0.9
-0.2
-0.6
-0.2
nitrogen source
Parabanic Acid (N)
-0.2
+0.5
-0.1
-0.9
+0.5
stress
Fusidic 0.125 mg/ml
+0.6
+0.4
-0.1
+1.2
-0.1
stress
nitrate 200 mM
+1.0
-0.2
-0.3
+1.3
+0.2
stress
methylglyoxal 0.009 vol%
+0.9
-0.6
+0.7
+0.9
+0.7
motility
outer cut, LB soft agar motility assay
+2.0
+2.0
+1.7
+1.2
-0.3
motility
outer cut, LB soft agar motility assay
+1.8
+2.5
+1.4
+1.9
+0.1
motility
outer cut, LB soft agar motility assay
+2.3
+2.7
+1.5
+2.0
+1.0
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