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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_08055 and AO353_08060 are separated by 29 nucleotides
AO353_08060 and AO353_08065 are separated by 27 nucleotides
AO353_08065 and AO353_08070 are separated by 107 nucleotides
AO353_08070 and AO353_08075 are separated by 90 nucleotides
AO353_08055: AO353_08055 - ABC transporter, at 1,776,110 to 1,777,012
_08055
AO353_08060: AO353_08060 - hypothetical protein, at 1,777,042 to 1,777,392
_08060
AO353_08065: AO353_08065 - amino acid dehydrogenase, at 1,777,420 to 1,778,661
_08065
AO353_08070: AO353_08070 - LysR family transcriptional regulator, at 1,778,769 to 1,779,680
_08070
AO353_08075: AO353_08075 - hemolysin III, at 1,779,771 to 1,780,388
_08075
Group
Condition
AO353
_08055
AO353
_08060
AO353
_08065
AO353
_08070
AO353
_08075
stress
Doxycycline hyclate 0.0006 mg/ml
-0.3
-1.7
-0.4
-0.4
-0.6
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.0
-2.0
-0.8
+0.3
-0.4
nitrogen source
Adenosine (N)
+0.1
-0.3
-0.1
-0.2
-1.7
carbon source
L-Valine (C)
-0.1
-2.2
+0.2
+0.2
+0.3
carbon source
L-Aspartic Acid (C)
+0.1
-0.4
-0.6
-0.6
+0.1
stress
1-ethyl-3-methylimidazolium chloride 170 mM
-0.1
-0.5
-0.2
-0.5
+0.0
carbon source
L-Aspartic Acid (C)
-0.0
-0.3
-0.8
-0.2
+0.0
anaerobic
N1B4wt with N2E3m denitrifying replicate C
+0.0
-1.3
+0.1
-0.4
+0.3
motility
outer cut, LB soft agar motility assay
+0.2
-1.1
-0.1
-0.1
+0.0
stress
sodium fluoride 6.25 mM
+0.0
-0.9
+0.2
-0.0
-0.3
nitrogen source
L-tyrosine (N)
+0.2
-1.2
-0.1
-0.0
+0.1
stress
Sisomicin 0.008 mg/ml
-0.1
-1.2
-0.1
+0.1
+0.3
stress
Cisplatin 0.006 mg/ml
-0.5
-0.4
-0.0
+0.1
+0.6
carbon source
casaminos (C)
+0.1
-0.8
+0.0
+0.3
+0.1
carbon source
L-Serine (C)
-0.1
+0.4
+0.0
+0.4
-0.3
motility
outer cut, LB soft agar motility assay
+0.0
+0.6
-0.2
-0.2
+0.4
carbon source
L-Ornithine
-0.0
-0.4
+0.4
-0.1
+0.8
carbon source
L-Ornithine
-0.5
+0.2
+0.4
+0.1
+0.6
pH
Minimal media pH9
-0.2
+0.7
+0.2
-0.3
+0.4
carbon source
D-Ribose (C)
+0.1
-0.5
+0.7
-0.1
+0.6
pH
Minimal media pH9
+0.1
+0.4
+0.2
-0.1
+0.8
carbon source
L-Citrulline
+0.1
-0.0
+0.5
-0.1
+0.9
nitrogen source
Parabanic Acid (N)
-0.1
+0.3
+0.3
+0.7
+0.4
carbon source
D-Glucose
-0.3
+0.1
+0.6
+0.4
+0.9
carbon source
D-Glucose
+0.1
+0.3
+0.3
+0.2
+0.8
carbon source
L-Citrulline
-0.0
+0.8
+0.2
-0.2
+1.0
carbon source
L-Ornithine
+0.1
+0.1
+0.9
+0.0
+0.7
carbon source
L-Citrulline
-0.1
+0.4
+0.4
+0.4
+0.9
carbon source
L-Ornithine
-0.0
+0.6
+0.4
+0.2
+0.9
carbon source
L-Citrulline
-0.0
+0.1
+0.7
+0.8
+0.8
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