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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_07915 and AO353_07920 are separated by 244 nucleotides
AO353_07920 and AO353_07925 are separated by 1159 nucleotides
AO353_07925 and AO353_07930 are separated by 101 nucleotides
AO353_07930 and AO353_07935 are separated by 294 nucleotides
AO353_07915: AO353_07915 - hypothetical protein, at 1,745,665 to 1,746,039
_07915
AO353_07920: AO353_07920 - hypothetical protein, at 1,746,284 to 1,746,643
_07920
AO353_07925: AO353_07925 - beta-hydroxylase, at 1,747,803 to 1,748,627
_07925
AO353_07930: AO353_07930 - fructose-1,6-bisphosphate aldolase, at 1,748,729 to 1,749,793
_07930
AO353_07935: AO353_07935 - hypothetical protein, at 1,750,088 to 1,750,420
_07935
Group
Condition
AO353
_07915
AO353
_07920
AO353
_07925
AO353
_07930
AO353
_07935
stress
Polymyxin B sulfate 4 mg/ml
-0.5
-0.4
-0.9
N.D.
-1.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.5
-1.3
-1.0
N.D.
+0.3
stress
Sisomicin 0.008 mg/ml
-0.0
-1.3
-0.1
N.D.
-0.7
carbon source
L-Leucine (C)
-0.9
+0.1
+0.0
N.D.
-1.2
stress
Cisplatin 0.006 mg/ml
+0.2
-1.1
-0.3
N.D.
-0.7
stress
Cisplatin 0.006 mg/ml
-0.5
-0.4
-0.1
N.D.
-0.9
stress
Spectinomycin 0.2 mg/ml
+0.1
+0.2
-0.1
N.D.
-1.6
carbon source
L-Glutamine (C)
+0.1
-0.5
-0.2
N.D.
-0.9
stress
nitrate 200 mM
+0.2
-0.1
-0.1
N.D.
-1.5
stress
Spectinomycin 0.15 mg/ml
-0.5
+0.2
-0.2
N.D.
-0.7
stress
Benzalkonium Chloride 0.012 mg/ml
-0.3
+0.6
-1.5
N.D.
+0.0
stress
Lomefloxacin 0.001 mM
+0.1
+0.3
-1.7
N.D.
+0.3
stress
Benzethonium chloride 0.025 mM
+0.5
-0.3
-1.1
N.D.
-0.1
carbon source
L-Glutamic (C)
+0.4
-0.6
-0.1
N.D.
-0.7
stress
Chloramphenicol 0.004 mg/ml
-0.5
+0.5
-0.5
N.D.
-0.2
stress
Doxycycline hyclate 0.0002 mg/ml
+0.4
+0.5
-1.8
N.D.
+0.3
stress
Rifampicin 0.005 mg/ml
-0.3
-0.4
-0.6
N.D.
+0.7
stress
Benzalkonium Chloride 0.01 mg/ml
+0.1
+0.7
-0.7
N.D.
-0.5
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.5
+0.2
-0.2
N.D.
-0.8
stress
copper (II) chloride 2.5 mM
+0.7
-0.7
-0.1
N.D.
-0.1
stress
Gentamicin 0.006 mg/ml
+0.3
+0.6
-0.3
N.D.
-0.7
stress
Spectinomycin 0.1 mg/ml
+0.4
+0.4
-0.4
N.D.
-0.6
stress
copper (II) chloride 2.5 mM
+0.4
+0.5
-0.2
N.D.
-0.6
stress
Doxycycline hyclate 0.0006 mg/ml
+0.4
+0.3
-1.8
N.D.
+1.6
stress
methylglyoxal 0.009 vol%
+0.4
-0.1
-1.1
N.D.
+1.7
motility
outer cut, LB soft agar motility assay
+0.7
-0.3
-0.3
N.D.
+1.0
stress
Fusidic 0.125 mg/ml
-0.2
+0.0
-0.7
N.D.
+1.9
carbon source
L-Citrulline
+0.1
+1.3
+0.2
N.D.
-0.4
carbon source
D-Fructose (C)
-0.2
-0.2
-0.2
N.D.
+2.6
carbon source
D-Fructose (C)
+0.0
-0.1
-0.1
N.D.
+2.3
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