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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_07790 and AO353_07795 are separated by 267 nucleotides
AO353_07795 and AO353_07800 are separated by 426 nucleotides
AO353_07800 and AO353_07805 are separated by 96 nucleotides
AO353_07805 and AO353_07810 are separated by 214 nucleotides
AO353_07790: AO353_07790 - ABC transporter for Carnitine, ATPase component
(from data)
, at 1,715,983 to 1,717,161
_07790
AO353_07795: AO353_07795 - beta-aspartyl peptidase, at 1,717,429 to 1,719,426
_07795
AO353_07800: AO353_07800 - transcriptional repressor BetI, at 1,719,853 to 1,720,458
_07800
AO353_07805: AO353_07805 - betaine-aldehyde dehydrogenase, at 1,720,555 to 1,722,027
_07805
AO353_07810: AO353_07810 - choline dehydrogenase, at 1,722,242 to 1,723,945
_07810
Group
Condition
AO353
_07790
AO353
_07795
AO353
_07800
AO353
_07805
AO353
_07810
stress
Chloride 500 mM
-0.2
-0.7
-0.4
-2.6
-2.7
stress
Thallium(I) acetate 0.016 mg/ml
+0.1
+1.0
-2.6
-2.2
-2.1
stress
Thallium(I) acetate 0.008 mg/ml
+0.6
+1.1
-3.5
-2.0
-1.9
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
+1.2
-2.7
-2.1
-2.0
stress
Thallium(I) acetate 0.016 mg/ml
+0.2
+0.6
-2.1
-2.1
-2.0
stress
Choline chloride 358 mM
-0.1
-0.3
-0.7
-2.0
-1.9
stress
Paraquat dichloride 0.032 mg/mL
+1.3
+3.4
-3.9
-2.7
-2.7
stress
Choline chloride 268.5 mM
-0.5
-0.0
-0.1
-1.6
-1.8
nitrogen source
Carnitine Hydrochloride (N)
-2.1
-0.1
-0.7
-0.7
-0.3
motility
outer cut, LB soft agar motility assay
-0.4
-0.2
+0.2
-0.9
-1.2
carbon source
Carnitine Hydrochloride (C)
-2.9
+0.0
+0.6
+0.1
-0.3
motility
outer cut, LB soft agar motility assay
+0.0
-0.0
-0.5
-1.1
-0.6
motility
outer cut, LB soft agar motility assay
-0.6
+0.1
-0.4
-0.7
-0.4
carbon source
acetate (C)
-0.8
+0.4
-0.7
-0.4
-0.4
nitrogen source
Parabanic Acid (N)
-0.5
-0.4
-0.3
-0.3
-0.3
stress
Cholin acetate 38 mM
-0.6
-0.1
+0.2
-0.8
-0.3
stress
Sisomicin 0.008 mg/ml
-0.2
+0.3
-1.0
+0.2
-0.9
carbon source
L-Citrulline
-0.6
+0.0
-0.1
+0.1
-0.8
carbon source
L-Leucine (C)
-0.2
+0.1
-1.3
+0.0
-0.0
nitrogen source
Gly-DL-Asp (N)
-0.5
-0.3
-0.6
-0.1
+0.2
stress
methylglyoxal 0.009 vol%
-0.6
-0.1
+0.4
-0.4
-0.2
carbon source
acetate (C)
+0.5
+0.2
-1.0
-0.3
-0.3
carbon source
L-Citrulline
-0.6
+0.1
-0.2
+0.5
-0.2
stress
Lomefloxacin 0.001 mM
-0.8
+0.0
+0.2
+0.9
-0.3
stress
nitrate 200 mM
-0.6
+0.0
+0.8
+0.1
-0.0
carbon source
L-Ornithine
-0.4
-0.0
+0.9
+0.2
-0.0
stress
Spectinomycin 0.2 mg/ml
+0.4
+0.3
-0.4
+0.6
-0.1
stress
Benzalkonium Chloride 0.01 mg/ml
-0.1
-0.4
+0.9
+1.6
+1.1
stress
Benzethonium chloride 0.025 mM
-0.3
-0.0
+1.1
+1.9
+0.9
stress
Benzalkonium Chloride 0.012 mg/ml
-0.0
-0.2
+1.5
+2.8
+1.6
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