Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_07770 and AO353_07775 are separated by 446 nucleotidesAO353_07775 and AO353_07780 are separated by 431 nucleotidesAO353_07780 and AO353_07785 are separated by 66 nucleotidesAO353_07785 and AO353_07790 overlap by 4 nucleotides AO353_07770: AO353_07770 - AraC family transcriptional regulator, at 1,710,766 to 1,711,869 _07770 AO353_07775: AO353_07775 - serine dehydratase, at 1,712,316 to 1,713,692 _07775 AO353_07780: AO353_07780 - Carnitine ABC transporter, substrate-binding component CaiX (from data), at 1,714,124 to 1,715,074 _07780 AO353_07785: AO353_07785 - ABC transporter for Carnitine, permease component (from data), at 1,715,141 to 1,715,986 _07785 AO353_07790: AO353_07790 - ABC transporter for Carnitine, ATPase component (from data), at 1,715,983 to 1,717,161 _07790
Group Condition AO353_07770 AO353_07775 AO353_07780 AO353_07785 AO353_07790
carbon source Carnitine Hydrochloride (C) -3.2 -0.6 -3.0 -3.8 -2.9
nitrogen source Carnitine Hydrochloride (N) -0.9 -0.4 -1.0 -1.5 -2.1
carbon source L-Leucine (C) -1.0 -0.4 +0.1 -0.2 -0.2
survival 4C survival; 672 hrs -0.0 +0.7 -1.5 -0.0 -0.1
stress Cholin acetate 38 mM -0.3 +0.4 -0.2 -0.2 -0.6
carbon source L-Ornithine -0.1 -0.0 +0.3 -1.6 +0.6
carbon source L-Phenylalanine (C) +0.3 +0.1 +0.2 -0.8 -0.5
stress nitrate 200 mM +0.2 -0.0 +0.2 -0.4 -0.6
carbon source L-Citrulline -0.7 +0.3 +0.7 -0.2 -0.6
carbon source D-Alanine (C) +0.0 -0.1 -0.4 -0.5 +0.5
lb LB -0.3 +0.3 +0.1 +0.3 -0.7
stress methylglyoxal 0.009 vol% -0.1 +0.3 +0.3 -0.2 -0.6
stress Lomefloxacin 0.001 mM -0.1 +0.1 +0.5 +0.1 -0.8
survival 4C survival; 360 hrs -0.5 +0.4 -0.4 +0.0 +0.3
carbon source L-Citrulline -0.8 +0.0 +0.3 +0.3 +0.1
stress Doxycycline hyclate 0.0006 mg/ml -0.5 -0.1 +0.3 +0.4 -0.1
carbon source D-Glucose +0.5 +0.2 +0.4 -0.7 -0.4
stress Thallium(I) acetate 0.016 mg/ml -0.3 -0.3 +0.2 +0.2 +0.2
stress Choline chloride 268.5 mM -0.1 +0.3 -0.0 +0.4 -0.5
pH Minimal media pH9 +0.6 -0.1 +0.1 -0.5 +0.0
anaerobic Anaerobic, acetate donor; nitrate and iron +0.5 +0.3 +0.1 -0.2 -0.6
stress Thallium(I) acetate 0.008 mg/ml -0.7 +0.0 +0.4 +0.2 +0.6
nitrogen source Gly-DL-Asp (N) +1.2 -0.3 +0.0 +0.1 -0.5
carbon source L-Ornithine +0.5 -0.1 +0.6 +0.0 -0.4
motility outer cut, LB soft agar motility assay +0.7 +0.4 -0.1 +0.2 -0.6
stress Sisomicin 0.008 mg/ml -0.3 +0.8 +0.1 +0.0 -0.2
carbon source L-Ornithine +0.6 +0.1 +0.4 -0.5 +0.2
carbon source L-Citrulline -0.6 +0.3 +0.6 +0.4 +0.5
carbon source L-Serine (C) +0.1 +0.5 +1.0 +0.5 +0.2
stress Paraquat dichloride 0.032 mg/mL -0.3 -0.3 +1.1 +0.8 +1.3
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