Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_07710 and AO353_07715 are separated by 15 nucleotidesAO353_07715 and AO353_07720 are separated by 79 nucleotidesAO353_07720 and AO353_07725 are separated by 235 nucleotidesAO353_07725 and AO353_07730 are separated by 48 nucleotides AO353_07710: AO353_07710 - DgcA Dimethylglycine demethylase subunit A (from data), at 1,698,990 to 1,701,050 _07710 AO353_07715: AO353_07715 - hydrocarbon binding protein, at 1,701,066 to 1,701,596 _07715 AO353_07720: AO353_07720 - peptidase M19, at 1,701,676 to 1,702,653 _07720 AO353_07725: AO353_07725 - hypothetical protein, at 1,702,889 to 1,703,290 _07725 AO353_07730: AO353_07730 - hypothetical protein, at 1,703,339 to 1,703,755 _07730
Group Condition AO353_07710 AO353_07715 AO353_07720 AO353_07725 AO353_07730
carbon source Carnitine Hydrochloride (C) -3.8 -3.6 -3.6 +0.4 -0.1
nitrogen source Carnitine Hydrochloride (N) -2.9 -2.9 -2.4 -0.2 +0.1
stress Lomefloxacin 0.001 mM -0.2 -0.3 +0.2 -0.7 -0.7
stress Doxycycline hyclate 0.0006 mg/ml +0.1 +0.1 -0.1 -1.3 -0.0
stress 1-ethyl-3-methylimidazolium acetate 30 mM -0.3 +0.1 -0.2 -0.6 -0.3
anaerobic Anaerobic, acetate donor; nitrate and iron -0.4 +0.0 -0.9 -0.2 +0.3
motility outer cut, LB soft agar motility assay -0.2 -0.0 -0.2 -0.3 -0.4
stress Tetracycline 0.0016 mg/ml +0.1 -0.1 -0.2 -0.7 -0.2
stress Rifampicin 0.005 mg/ml +0.1 +0.1 -0.5 -0.4 -0.4
nitrogen source Thymine (N) +0.0 +0.2 -0.2 -0.0 -0.9
temperature LB 30C -0.1 -0.2 -0.1 +0.1 -0.6
stress methylglyoxal 0.009 vol% -0.3 +0.0 +0.2 -0.7 -0.0
stress Cisplatin 0.006 mg/ml +0.4 +0.3 +0.1 -1.2 -0.4
nitrogen source Parabanic Acid (N) +0.1 -0.2 +0.1 -0.1 -0.6
lb LB -0.0 +0.2 -0.1 -0.2 -0.6
carbon source D-Glucose +0.1 -0.1 +0.2 +0.1 -1.0
stress Doxycycline hyclate 0.0002 mg/ml +0.0 +0.2 +0.1 -0.5 -0.5
carbon source acetate (C) +0.3 +0.3 -0.2 -0.1 -0.9
carbon source L-Leucine (C) -0.3 +0.1 -0.1 +0.6 -0.7
stress Cisplatin 0.006 mg/ml +0.1 +0.3 -0.2 -1.4 +0.8
motility outer cut, LB soft agar motility assay +0.2 +0.2 +0.3 -0.1 -0.8
stress nitrate 200 mM +0.1 -0.3 +0.3 +0.3 -0.4
stress Sisomicin 0.008 mg/ml -0.1 +0.1 +0.4 +0.2 -0.5
carbon source L-Citrulline -0.1 -0.2 +0.3 +0.6 -0.2
carbon source L-Valine (C) -0.1 -0.1 -0.2 +0.1 +0.7
pH Minimal media pH9 +0.4 +0.3 +0.3 -0.1 -0.3
denitrifying Nitrate reduction, replicate B -0.1 -0.0 -0.2 +0.6 +0.4
nitrogen source L-Threonine (N) +0.2 +0.2 +0.3 -0.2 +0.3
carbon source L-Citrulline -0.0 +0.3 +0.4 +0.4 +0.5
survival 4C survival; 672 hrs +0.4 +0.2 +0.0 +0.5 +0.4
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