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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_07510 and AO353_07515 overlap by 8 nucleotides
AO353_07515 and AO353_07520 overlap by 8 nucleotides
AO353_07520 and AO353_07525 are separated by 134 nucleotides
AO353_07525 and AO353_07530 are separated by 90 nucleotides
AO353_07510: AO353_07510 - malonyl-[acyl-carrier protein] O-methyltransferase BioC, at 1,653,384 to 1,654,196
_07510
AO353_07515: AO353_07515 - transporter, at 1,654,189 to 1,654,920
_07515
AO353_07520: AO353_07520 - 8-amino-7-oxononanoate synthase, at 1,654,913 to 1,656,091
_07520
AO353_07525: AO353_07525 - biotin synthase, at 1,656,226 to 1,657,281
_07525
AO353_07530: AO353_07530 - amidophosphoribosyltransferase, at 1,657,372 to 1,658,112
_07530
Group
Condition
AO353
_07510
AO353
_07515
AO353
_07520
AO353
_07525
AO353
_07530
nitrogen source
D-Serine (N)
-3.7
-4.8
-3.6
-3.4
+0.2
carbon source
D-Serine (C)
-3.9
-3.7
-3.6
-3.7
-0.0
nitrogen source
D-Alanine (N)
-2.9
-4.5
-3.3
-3.9
-0.0
carbon source
D-Alanine (C)
-3.5
-3.8
-3.0
-3.7
-0.6
carbon source
D,L-Lactate (C)
-2.7
-4.7
-3.1
-3.7
-0.1
nitrogen source
L-Citrulline (N)
-3.6
-3.5
-2.9
-3.8
-0.2
pH
Minimal media pH9
-3.5
-3.1
-3.3
-4.0
+0.2
carbon source
L-Isoleucine (C)
-3.1
-3.7
-3.3
-3.6
+0.2
carbon source
butyrate (C)
-3.1
-4.5
-3.1
-2.8
+0.1
nitrogen source
Putrescine (N)
-3.3
-3.4
-3.1
-3.4
-0.1
carbon source
L-Leucine (C)
-2.8
-3.5
-3.1
-3.5
-0.1
nitrogen source
nitrite (N)
-3.3
-3.3
-3.0
-3.2
+0.1
nitrogen source
L-Serine (N)
-2.6
-4.6
-2.8
-2.7
+0.1
carbon source
D,L-Lactate (C)
-2.8
-3.4
-2.8
-3.6
-0.1
pH
Minimal media pH8
-2.9
-3.8
-3.2
-2.9
+0.2
carbon source
casaminos (C)
-3.0
-3.1
-3.3
-3.2
+0.1
pH
Minimal media pH9
-3.8
-2.2
-3.5
-3.8
+0.8
carbon source
L-Alanine (C)
-3.4
-1.4
-3.3
-3.7
-0.4
carbon source
L-Lactate (C)
-2.6
-3.6
-2.5
-3.2
-0.1
carbon source
L-Lactate (C)
-2.2
-3.6
-2.7
-3.1
-0.2
carbon source
L-Valine (C)
-2.8
-2.2
-2.6
-3.8
-0.1
pH
Minimal media pH8
-2.7
-3.1
-2.9
-2.8
-0.1
pH
Minimal media pH6
-2.6
-3.2
-2.4
-3.3
+0.1
nitrogen source
Ammonium chloride (N)
-3.5
-1.6
-3.1
-3.2
+0.0
nitrogen source
L-Serine (N)
-2.5
-3.5
-2.7
-2.9
+0.1
pH
Minimal media pH7
-2.5
-2.6
-2.6
-3.2
-0.4
carbon source
D-Mannose (C)
-2.2
-3.8
-2.2
-3.2
+0.1
carbon source
D-Lactate (C)
-2.4
-3.3
-2.5
-3.2
+0.1
carbon source
propionate (C)
-2.5
-3.1
-2.3
-3.2
+0.0
carbon source
L-Citrulline (C)
-1.8
-3.5
-2.1
-3.1
+0.2
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