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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_07245 and AO353_07250 are separated by 257 nucleotides
AO353_07250 and AO353_07255 are separated by 13 nucleotides
AO353_07255 and AO353_07260 are separated by 195 nucleotides
AO353_07260 and AO353_07265 are separated by 47 nucleotides
AO353_07245: AO353_07245 - alcohol dehydrogenase, at 1,589,429 to 1,590,577
_07245
AO353_07250: AO353_07250 - polyamine ABC transporter permease, at 1,590,835 to 1,591,659
_07250
AO353_07255: AO353_07255 - polyamine ABC transporter substrate-binding protein, at 1,591,673 to 1,592,920
_07255
AO353_07260: AO353_07260 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,593,116 to 1,594,156
_07260
AO353_07265: AO353_07265 - spermidine/putrescine ABC transporter ATP-binding protein, at 1,594,204 to 1,595,328
_07265
Group
Condition
AO353
_07245
AO353
_07250
AO353
_07255
AO353
_07260
AO353
_07265
carbon source
L-Tryptophan (C)
-0.2
-2.1
-0.5
+0.1
-0.2
carbon source
Uridine (C)
-0.2
-1.3
-0.7
+0.0
-0.1
carbon source
Cytidine (C)
-0.2
-1.2
-0.9
+0.1
+0.0
nitrogen source
Inosine (N)
-0.0
-1.6
-0.2
-0.0
-0.0
carbon source
L-Aspartic Acid (C)
-0.1
-1.1
-0.8
-0.1
+0.1
carbon source
D-Ribose (C)
+0.0
-1.2
-0.7
+0.0
-0.0
carbon source
L-Citrulline (C)
-0.1
-1.1
-0.4
-0.1
-0.2
carbon source
L-Citrulline
-0.3
-0.4
-0.5
-0.4
-0.1
pH
Minimal media pH9
+0.1
-1.8
-0.1
+0.0
+0.1
carbon source
D-Serine (C)
-0.2
-1.0
-0.1
+0.0
-0.3
carbon source
L-Serine (C)
+0.1
-0.6
-0.8
-0.3
+0.1
carbon source
D-Ribose (C)
+0.1
-0.9
-0.8
+0.0
+0.1
carbon source
pyruvate (C)
+0.0
-1.2
-0.2
+0.1
-0.3
nitrogen source
Uridine (N)
-0.2
-0.9
-0.5
+0.1
+0.0
carbon source
acetate (C)
+0.1
-1.3
-0.1
-0.2
+0.0
carbon source
L-Isoleucine (C)
+0.0
-0.6
-0.5
+0.2
-0.4
stress
methylglyoxal 0.009 vol%
-0.0
-1.4
+0.1
+0.2
-0.0
stress
Doxycycline hyclate 0.0006 mg/ml
-0.2
-0.5
-0.1
-0.6
+0.5
carbon source
L-Ornithine
-0.4
-0.7
-0.5
-0.1
+0.9
carbon source
L-Ornithine
-0.0
-0.3
-0.3
-0.3
+1.1
stress
Benzalkonium Chloride 0.012 mg/ml
-0.1
+1.2
+0.1
-0.2
-0.0
pH
Minimal media pH9
+0.1
+1.3
-0.2
+0.3
+0.0
carbon source
D-Glucose
+0.3
+1.3
+0.1
-0.1
+0.1
motility
outer cut, LB soft agar motility assay
+0.4
+1.2
+0.1
+0.2
-0.2
stress
nitrate 200 mM
+0.1
+1.0
+0.3
+0.1
+0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.0
+1.1
+0.2
+0.1
+0.4
carbon source
L-Ornithine
+0.1
-0.2
-0.3
+0.2
+2.0
carbon source
L-Ornithine
-0.1
-0.4
-0.2
+0.1
+2.6
carbon source
propionate (C)
+0.1
+1.0
+1.6
+0.0
+0.2
carbon source
propionate (C)
-0.0
+1.3
+1.4
-0.0
+0.3
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