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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_06620 and AO353_06625 are separated by 1 nucleotides
AO353_06625 and AO353_06630 are separated by 62 nucleotides
AO353_06630 and AO353_06635 overlap by 16 nucleotides
AO353_06635 and AO353_06640 are separated by 51 nucleotides
AO353_06620: AO353_06620 - hypothetical protein, at 1,472,394 to 1,474,025
_06620
AO353_06625: AO353_06625 - hypothetical protein, at 1,474,027 to 1,478,532
_06625
AO353_06630: AO353_06630 - hypothetical protein, at 1,478,595 to 1,479,245
_06630
AO353_06635: AO353_06635 - hypothetical protein, at 1,479,230 to 1,480,954
_06635
AO353_06640: AO353_06640 - hypothetical protein, at 1,481,006 to 1,481,797
_06640
Group
Condition
AO353
_06620
AO353
_06625
AO353
_06630
AO353
_06635
AO353
_06640
stress
Doxycycline hyclate 0.0006 mg/ml
-0.4
-0.1
-0.9
-0.1
-0.2
motility
outer cut, LB soft agar motility assay
-0.4
+0.0
-0.1
-0.3
-0.1
stress
Tetracycline 0.0016 mg/ml
-0.1
-0.0
-0.5
-0.1
-0.1
stress
Cisplatin 0.006 mg/ml
+0.0
+0.0
-0.3
+0.0
-0.5
carbon source
propionate (C)
-0.0
-0.1
-0.3
-0.1
-0.1
stress
1-ethyl-3-methylimidazolium chloride 170 mM
-0.1
-0.1
-0.3
+0.0
-0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.1
-0.3
+0.1
-0.0
-0.3
carbon source
L-Citrulline (C)
+0.1
-0.1
-0.4
+0.0
-0.1
stress
Nickel (II) chloride 0.625 mM
+0.0
+0.1
-0.3
-0.1
-0.2
stress
methylglyoxal 0.008 vol%
+0.1
-0.1
-0.0
-0.2
-0.3
carbon source
L-Ornithine
+0.2
-0.0
-0.5
-0.0
+0.1
carbon source
D-Glucose
+0.1
-0.1
-0.3
+0.1
+0.0
pH
Minimal media pH9
+0.3
-0.0
-0.2
-0.0
-0.1
carbon source
D-Alanine (C)
+0.2
-0.1
-0.1
+0.1
-0.2
carbon source
L-Ornithine
-0.2
+0.1
-0.1
-0.0
+0.2
denitrifying
Nitrate reduction, replicate C
+0.3
+0.2
-0.1
+0.1
-0.3
motility
outer cut, LB soft agar motility assay
+0.2
-0.1
-0.4
+0.2
+0.2
stress
Nalidixic 0.004 mg/ml
+0.2
+0.0
+0.1
+0.1
-0.2
stress
A22 0.002 mg/ml
+0.0
+0.1
-0.2
+0.1
+0.2
stress
methylglyoxal 0.009 vol%
-0.2
-0.0
+0.3
+0.1
+0.2
survival
4C survival; 672 hrs
+0.4
+0.0
+0.1
-0.1
-0.0
carbon source
D-Glucose
+0.1
+0.3
+0.0
-0.3
+0.3
motility
outer cut, LB soft agar motility assay
+0.3
+0.1
-0.2
+0.3
-0.1
stress
Paraquat dichloride 0.032 mg/mL
-0.1
+0.1
-0.1
+0.3
+0.2
carbon source
L-Citrulline
+0.2
+0.1
-0.4
+0.0
+0.5
carbon source
pyruvate (C)
+0.0
+0.0
+0.3
+0.3
-0.1
carbon source
acetate (C)
+0.1
-0.1
+0.2
+0.3
+0.2
carbon source
L-Citrulline
+0.2
-0.0
+0.3
+0.0
+0.2
stress
Vanillin 1.25 mM
-0.0
+0.1
+0.2
+0.2
+0.2
carbon source
L-Citrulline
-0.1
+0.2
+0.1
+0.1
+0.5
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