Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_06545 and AO353_06550 overlap by 4 nucleotidesAO353_06550 and AO353_06555 are separated by 205 nucleotidesAO353_06555 and AO353_06560 are separated by 319 nucleotidesAO353_06560 and AO353_06565 are separated by 245 nucleotides AO353_06545: AO353_06545 - aromatic acid decarboxylase, at 1,455,277 to 1,455,909 _06545 AO353_06550: AO353_06550 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 1,455,906 to 1,457,255 _06550 AO353_06555: AO353_06555 - Fis family transcriptional regulator, at 1,457,461 to 1,459,377 _06555 AO353_06560: AO353_06560 - aldehyde dehydrogenase, at 1,459,697 to 1,461,217 _06560 AO353_06565: AO353_06565 - ethanolamine permease, at 1,461,463 to 1,462,833 _06565
Group Condition AO353_06545 AO353_06550 AO353_06555 AO353_06560 AO353_06565
carbon source propionate (C) N.D. -2.9 -0.2 +0.2 -0.0
carbon source propionate (C) N.D. -2.5 +0.0 +0.1 -0.1
carbon source acetate (C) N.D. -2.3 +0.2 +0.0 -0.1
carbon source acetate (C) N.D. -2.3 +0.2 +0.1 +0.0
carbon source D-Ribose (C) N.D. -1.5 -0.0 -0.1 -0.1
stress Doxycycline hyclate 0.0006 mg/ml N.D. -1.6 +0.3 -0.1 -0.1
carbon source D-Ribose (C) N.D. -1.3 +0.0 -0.1 -0.0
pH Minimal media pH9 N.D. -0.9 -0.0 -0.2 -0.2
stress sodium fluoride 6.25 mM N.D. -0.5 -0.1 -0.2 -0.5
stress Ceftazidime 0.12 mg/ml N.D. -1.5 +0.0 +0.1 +0.1
carbon source L-Leucine (C) N.D. -0.7 -0.2 -0.0 -0.2
carbon source L-Citrulline N.D. -0.6 -0.1 -0.3 -0.2
stress Fusidic 0.125 mg/ml N.D. -0.8 -0.3 -0.1 -0.0
carbon source butyrate (C) N.D. -0.5 -0.4 -0.3 +0.1
stress Cobalt chloride 0.16 mM N.D. -0.4 -0.1 -0.4 -0.1
carbon source L-Aspartic Acid (C) N.D. -0.9 +0.0 +0.0 -0.1
stress 1-ethyl-3-methylimidazolium acetate 30 mM N.D. -0.7 +0.1 -0.0 -0.1
stress Cisplatin 0.006 mg/ml N.D. -0.5 -0.4 +0.1 +0.3
nitrogen source Gly-Glu (N) N.D. -0.7 +0.1 +0.1 -0.1
stress Paraquat dichloride 0.032 mg/mL N.D. -0.7 -0.1 +0.1 +0.3
stress Rifampicin 0.005 mg/ml N.D. -0.6 +0.3 +0.0 -0.1
motility outer cut, LB soft agar motility assay N.D. +0.6 -0.4 +0.3 -0.2
carbon source D-Fructose (C) N.D. +0.6 -0.1 +0.1 -0.1
carbon source D-Fructose (C) N.D. +0.8 +0.2 -0.1 -0.2
motility outer cut, LB soft agar motility assay N.D. +0.6 +0.2 +0.2 +0.0
anaerobic Anaerobic, acetate donor; nitrate and iron N.D. +1.1 -0.0 -0.2 +0.2
motility outer cut, LB soft agar motility assay N.D. +0.4 +0.2 +0.4 -0.0
carbon source L-Serine (C) N.D. +0.9 +0.1 -0.1 +0.1
carbon source pyruvate (C) N.D. +1.5 +0.0 -0.1 -0.1
carbon source pyruvate (C) N.D. +1.6 -0.0 -0.1 -0.0
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