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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_06540 and AO353_06545 overlap by 8 nucleotides
AO353_06545 and AO353_06550 overlap by 4 nucleotides
AO353_06550 and AO353_06555 are separated by 205 nucleotides
AO353_06555 and AO353_06560 are separated by 319 nucleotides
AO353_06540: AO353_06540 - hypothetical protein, at 1,455,000 to 1,455,284
_06540
AO353_06545: AO353_06545 - aromatic acid decarboxylase, at 1,455,277 to 1,455,909
_06545
AO353_06550: AO353_06550 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 1,455,906 to 1,457,255
_06550
AO353_06555: AO353_06555 - Fis family transcriptional regulator, at 1,457,461 to 1,459,377
_06555
AO353_06560: AO353_06560 - aldehyde dehydrogenase, at 1,459,697 to 1,461,217
_06560
Group
Condition
AO353
_06540
AO353
_06545
AO353
_06550
AO353
_06555
AO353
_06560
carbon source
propionate (C)
-1.0
N.D.
-2.5
+0.0
+0.1
carbon source
acetate (C)
-1.3
N.D.
-2.3
+0.2
+0.0
pH
Minimal media pH6
-3.1
N.D.
-0.1
+0.1
+0.1
carbon source
propionate (C)
+0.3
N.D.
-2.9
-0.2
+0.2
stress
Cisplatin 0.006 mg/ml
-1.7
N.D.
-0.5
-0.4
+0.1
carbon source
D-Ribose (C)
-0.7
N.D.
-1.3
+0.0
-0.1
stress
Cisplatin 0.006 mg/ml
-2.1
N.D.
+0.2
+0.0
-0.2
carbon source
L-Alanine (C)
-2.3
N.D.
-0.1
+0.0
+0.4
stress
Doxycycline hyclate 0.0006 mg/ml
-0.5
N.D.
-1.6
+0.3
-0.1
carbon source
acetate (C)
+0.1
N.D.
-2.3
+0.2
+0.1
stress
Doxycycline hyclate 0.0002 mg/ml
-1.1
N.D.
-0.7
-0.1
+0.0
carbon source
D-Ribose (C)
+0.0
N.D.
-1.5
-0.0
-0.1
carbon source
L-Glutamine (C)
-1.4
N.D.
-0.0
-0.2
+0.1
stress
Chloramphenicol 0.0025 mg/ml
-1.2
N.D.
-0.2
+0.1
-0.1
stress
Ceftazidime 0.12 mg/ml
-0.1
N.D.
-1.5
+0.0
+0.1
stress
Rifampicin 0.005 mg/ml
-1.0
N.D.
-0.6
+0.3
+0.0
nitrogen source
L-Tryptophan (N)
-1.4
N.D.
+0.0
+0.1
+0.1
stress
Cholin acetate 10 mM
-1.2
N.D.
-0.2
+0.1
+0.1
stress
Furfuryl Alcohol 0.0625 vol%
-1.0
N.D.
-0.3
+0.2
+0.3
survival
4C survival; 672 hrs
-1.4
N.D.
+0.3
+0.2
+0.0
nitrogen source
Parabanic Acid (N)
-1.3
N.D.
+0.1
+0.1
+0.3
motility
outer cut, LB soft agar motility assay
-1.0
N.D.
+0.6
-0.4
+0.3
carbon source
L-Citrulline
+0.7
N.D.
-0.6
-0.1
-0.3
pH
Minimal media pH9
+1.3
N.D.
-0.9
-0.0
-0.2
carbon source
pyruvate (C)
-0.9
N.D.
+1.5
+0.0
-0.1
nitrogen source
Gly-Glu (N)
+1.3
N.D.
-0.7
+0.1
+0.1
carbon source
L-Serine (C)
+0.6
N.D.
+0.9
+0.1
-0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.9
N.D.
+1.1
-0.0
-0.2
carbon source
pyruvate (C)
+0.3
N.D.
+1.6
-0.0
-0.1
motility
outer cut, LB soft agar motility assay
+1.5
N.D.
+0.4
+0.2
+0.4
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