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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_06365 and AO353_06370 are separated by 154 nucleotides
AO353_06370 and AO353_06375 are separated by 135 nucleotides
AO353_06375 and AO353_06380 are separated by 259 nucleotides
AO353_06380 and AO353_06385 overlap by 8 nucleotides
AO353_06365: AO353_06365 - hypothetical protein, at 1,420,286 to 1,420,840
_06365
AO353_06370: AO353_06370 - hypothetical protein, at 1,420,995 to 1,421,324
_06370
AO353_06375: AO353_06375 - (dimethylallyl)adenosine tRNA methylthiotransferase, at 1,421,460 to 1,422,794
_06375
AO353_06380: AO353_06380 - ATP-binding protein, at 1,423,054 to 1,424,073
_06380
AO353_06385: AO353_06385 - rRNA maturation factor, at 1,424,066 to 1,424,560
_06385
Group
Condition
AO353
_06365
AO353
_06370
AO353
_06375
AO353
_06380
AO353
_06385
pH
Minimal media pH9
-2.2
-0.5
-0.1
-0.4
N.D.
carbon source
acetate (C)
-2.0
-0.5
-0.2
-0.3
N.D.
motility
outer cut, LB soft agar motility assay
-1.9
-0.7
-0.9
+0.7
N.D.
carbon source
acetate (C)
-2.3
+0.1
-0.3
-0.2
N.D.
motility
outer cut, LB soft agar motility assay
-1.8
-0.7
-0.4
+0.3
N.D.
carbon source
propionate (C)
-2.8
-0.3
+0.1
+0.4
N.D.
motility
outer cut, LB soft agar motility assay
-2.1
+0.0
+0.0
-0.4
N.D.
carbon source
propionate (C)
-2.5
-0.3
+0.3
+0.1
N.D.
stress
perchlorate 75 mM
-1.5
-0.3
-0.5
-0.1
N.D.
pH
Minimal media pH9
-1.6
-0.3
+0.0
-0.2
N.D.
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-1.8
+0.1
-0.2
-0.1
N.D.
stress
Cholin acetate 38 mM
-1.0
-0.2
-0.0
-0.5
N.D.
survival
4C survival; 672 hrs
-1.0
-0.6
+0.1
-0.0
N.D.
stress
Cobalt chloride 0.32 mM
+0.5
-0.3
-0.2
-0.9
N.D.
carbon source
L-Ornithine
+0.8
-0.6
+0.3
+0.0
N.D.
stress
Sisomicin 0.008 mg/ml
+1.9
-0.5
-0.6
-0.2
N.D.
carbon source
L-Ornithine
+1.0
-0.3
+0.3
-0.2
N.D.
carbon source
Uridine (C)
+1.2
+0.2
+0.2
-0.7
N.D.
stress
Doxycycline hyclate 0.0006 mg/ml
+1.2
+0.0
-0.3
+0.2
N.D.
carbon source
D-Fructose (C)
+1.6
+0.1
+0.1
-0.3
N.D.
stress
Benzalkonium Chloride 0.012 mg/ml
+1.3
+0.3
+0.1
-0.1
N.D.
carbon source
Cytidine (C)
+1.6
-0.2
+0.1
+0.0
N.D.
stress
Fusidic 0.125 mg/ml
+1.9
+0.2
-0.5
-0.0
N.D.
stress
Tetracycline 0.0016 mg/ml
+1.6
-0.0
+0.1
+0.3
N.D.
stress
Cisplatin 0.006 mg/ml
+1.1
+1.0
-0.2
+0.2
N.D.
stress
Cisplatin 0.006 mg/ml
+1.7
+0.5
-0.2
+0.1
N.D.
carbon source
D-Ribose (C)
+2.2
-0.0
+0.1
-0.0
N.D.
stress
methylglyoxal 0.009 vol%
+2.1
+0.2
+0.2
-0.1
N.D.
carbon source
D-Ribose (C)
+2.5
+0.2
+0.0
-0.0
N.D.
stress
Rifampicin 0.005 mg/ml
+1.7
+0.1
+1.0
+0.3
N.D.
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