Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_06335 and AO353_06340 are separated by 148 nucleotidesAO353_06340 and AO353_06345 are separated by 74 nucleotidesAO353_06345 and AO353_06350 are separated by 440 nucleotidesAO353_06350 and AO353_06355 are separated by 18 nucleotides AO353_06335: AO353_06335 - AMP nucleosidase, at 1,411,142 to 1,412,605 _06335 AO353_06340: AO353_06340 - acyl-CoA dehydrogenase, at 1,412,754 to 1,414,403 _06340 AO353_06345: AO353_06345 - histidine kinase, at 1,414,478 to 1,416,865 _06345 AO353_06350: AO353_06350 - hydrogenase, at 1,417,306 to 1,418,103 _06350 AO353_06355: AO353_06355 - thiamine-phosphate pyrophosphorylase, at 1,418,122 to 1,418,745 _06355
Group Condition AO353_06335 AO353_06340 AO353_06345 AO353_06350 AO353_06355
pH Minimal media pH9 +0.5 +0.0 +0.2 -3.5 -4.1
pH Minimal media pH9 +0.6 -0.0 +0.1 -4.1 -2.6
stress 1-ethyl-3-methylimidazolium acetate 30 mM -3.2 -0.3 -0.2 -0.2 -0.3
pH Minimal media pH8 +0.0 +0.1 +0.1 -2.3 -1.5
stress acetate 68 mM -3.2 -0.0 -0.1 +0.1 -0.2
stress Furfuryl Alcohol 0.25 vol% -3.1 +0.1 -0.0 -0.1 -0.2
stress Cholin acetate 38 mM -2.5 +0.0 -0.1 -0.3 +0.3
nitrogen source Parabanic Acid (N) -0.4 -0.4 -0.0 -0.0 -1.8
radiation Ionizing radiation, 126.196 Gy, +0.2 +0.1 +0.2 -1.8 -1.3
stress sodium fluoride 6.25 mM +0.1 -0.1 -0.1 -0.2 -2.2
stress 1-ethyl-3-methylimidazolium lysine 10.5 mM +0.0 +0.0 -0.1 -0.7 -1.2
carbon source L-Citrulline -0.0 -0.6 +0.5 -0.1 -1.2
stress Cobalt chloride 0.32 mM -0.4 -0.1 -0.0 +0.1 -1.0
pH Minimal media pH8 -0.0 -0.1 +0.1 -0.8 -0.6
carbon source acetate (C) -0.9 +0.1 +0.7 +0.4 -1.8
stress methylglyoxal 0.009 vol% -1.1 -0.3 -0.2 -0.0 +0.6
denitrifying Nitrate reduction, replicate C -0.0 +0.2 +0.1 -0.2 -1.1
carbon source L-Citrulline +0.2 -0.2 +0.3 +0.1 -1.4
nitrogen source L-tyrosine (N) +0.0 +0.1 +0.4 -0.7 -0.5
carbon source D-Serine (C) -0.1 -0.1 +0.4 +0.2 -0.8
nitrogen source L-Serine (N) +0.1 +0.0 +0.4 +0.2 -0.9
stress Chloride 500 mM -0.9 -0.1 +0.5 -0.0 +0.3
stress Nickel (II) chloride 0.625 mM +0.1 +0.1 +0.6 -0.1 -0.7
carbon source acetate (C) -0.8 +0.2 +0.5 +0.4 -0.1
motility outer cut, LB soft agar motility assay +0.2 +0.2 +0.7 -0.2 -0.4
stress Rifampicin 0.005 mg/ml +0.2 -0.2 +0.9 +0.1 -0.4
anaerobic Anaerobic, acetate donor; nitrate and iron -0.3 -0.4 +0.1 +0.8 +0.5
stress Gentamicin 0.006 mg/ml +0.2 -0.2 +0.6 +0.4 +0.3
survival 4C survival; 672 hrs +0.1 +0.1 +1.1 +0.1 +0.5
stress Sisomicin 0.008 mg/ml -0.1 +0.2 +0.9 +2.2 +1.1
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