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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_06100 and AO353_06105 are separated by 614 nucleotides
AO353_06105 and AO353_06110 are separated by 230 nucleotides
AO353_06110 and AO353_06115 are separated by 153 nucleotides
AO353_06115 and AO353_06120 are separated by 130 nucleotides
AO353_06100: AO353_06100 - thymidylate synthase, at 1,360,584 to 1,361,165
_06100
AO353_06105: AO353_06105 - short-chain dehydrogenase, at 1,361,780 to 1,362,466
_06105
AO353_06110: AO353_06110 - 8-oxoguanine deaminase, at 1,362,697 to 1,364,055
_06110
AO353_06115: AO353_06115 - adenosine deaminase, at 1,364,209 to 1,365,162
_06115
AO353_06120: AO353_06120 - MFS transporter, at 1,365,293 to 1,366,672
_06120
Group
Condition
AO353
_06100
AO353
_06105
AO353
_06110
AO353
_06115
AO353
_06120
anaerobic
Anaerobic, acetate donor; nitrate and iron
-3.1
+0.4
-0.8
+0.1
-0.3
carbon source
L-Citrulline
-2.2
+0.4
-0.7
+0.1
-0.1
motility
outer cut, LB soft agar motility assay
-1.5
+0.2
-0.1
-0.5
-0.0
carbon source
L-Citrulline
-1.5
-0.2
-0.0
-0.1
-0.1
stress
Cobalt chloride 0.32 mM
-1.1
-0.4
-0.1
-0.1
+0.1
carbon source
L-Citrulline
-1.1
+0.2
-0.1
-0.3
-0.2
carbon source
propionate (C)
-1.2
-0.2
+0.1
-0.2
-0.1
nitrogen source
Adenine (N)
+0.3
+0.3
-0.1
-1.8
-0.3
nitrogen source
L-Histidine (N)
-1.4
+0.1
-0.2
+0.0
+0.0
carbon source
L-Phenylalanine (C)
-1.6
+0.1
+0.2
+0.2
-0.2
carbon source
L-Isoleucine (C)
-1.5
+0.4
+0.4
-0.7
+0.0
survival
4C survival; 672 hrs
-1.5
+0.1
+0.1
-0.1
+0.0
carbon source
acetate (C)
-0.7
+0.3
-0.0
-0.8
-0.1
carbon source
L-Leucine (C)
-0.7
+0.3
-0.0
-0.9
+0.1
carbon source
Uridine (C)
-1.4
-0.1
+0.2
+0.1
-0.0
stress
Doxycycline hyclate 0.0006 mg/ml
-1.3
-0.1
-0.2
+0.6
+0.1
nitrogen source
L-Glutamine (N)
-1.2
+0.1
-0.1
+0.2
+0.1
nitrogen source
Parabanic Acid (N)
+0.5
-0.2
-0.4
-0.6
-0.1
stress
acetate 17 mM
-1.3
-0.1
+0.3
+0.2
+0.1
stress
acetate 68 mM
-1.2
-0.0
-0.0
+0.4
+0.1
carbon source
L-Ornithine
+0.8
+0.0
-0.2
-0.5
-0.3
carbon source
L-Ornithine
+0.7
+0.4
-0.3
-0.7
-0.1
denitrifying
Nitrate reduction, replicate C
+0.9
-0.3
-0.1
-0.5
+0.0
carbon source
D-Glucose
+0.7
+0.4
-0.3
-0.2
-0.2
temperature
LB 30C
+0.9
+0.2
-0.2
-0.2
+0.1
stress
Sisomicin 0.008 mg/ml
+1.0
+0.1
+0.3
-0.4
+0.2
carbon source
D-Glucose
+1.4
+0.5
-0.2
+0.0
-0.4
stress
Thallium(I) acetate 0.008 mg/ml
+1.4
-0.1
+0.0
+0.1
+0.1
carbon source
L-Citrulline
+1.4
+0.7
+0.1
-0.3
-0.1
pH
Minimal media pH9
+1.5
+0.2
-0.2
+0.3
-0.1
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