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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_06075 and AO353_06080 are separated by 637 nucleotides
AO353_06080 and AO353_06085 are separated by 75 nucleotides
AO353_06085 and AO353_06090 are separated by 138 nucleotides
AO353_06090 and AO353_06095 are separated by 109 nucleotides
AO353_06075: AO353_06075 - 16S ribosomal RNA, at 1,353,651 to 1,355,197
_06075
AO353_06080: AO353_06080 - methylmalonate-semialdehyde dehydrogenase, at 1,355,835 to 1,357,328
_06080
AO353_06085: AO353_06085 - omega amino acid--pyruvate aminotransferase, at 1,357,404 to 1,358,753
_06085
AO353_06090: AO353_06090 - LysR family transcriptional regulator, at 1,358,892 to 1,359,812
_06090
AO353_06095: AO353_06095 - TetR family transcriptional regulator, at 1,359,922 to 1,360,572
_06095
Group
Condition
AO353
_06075
AO353
_06080
AO353
_06085
AO353
_06090
AO353
_06095
nitrogen source
Uridine (N)
N.D.
-0.9
-3.8
-3.9
+0.1
nitrogen source
Thymine (N)
N.D.
-0.3
-2.7
-2.3
-0.0
carbon source
Uridine (C)
N.D.
-1.7
-1.1
-1.2
+0.1
pH
Minimal media pH9
N.D.
-0.4
-0.4
-0.3
-0.2
pH
Minimal media pH9
N.D.
-0.1
-0.6
-0.6
+0.3
motility
outer cut, LB soft agar motility assay
N.D.
+0.1
+0.2
-0.7
-0.5
carbon source
Trisodium citrate (C)
N.D.
-0.1
-0.2
-0.3
-0.2
carbon source
L-Leucine (C)
N.D.
-0.3
+0.2
-0.5
-0.3
carbon source
m-Inositol (C)
N.D.
-0.0
-0.6
-0.2
-0.0
carbon source
m-Inositol (C)
N.D.
-0.0
-0.8
-0.0
-0.0
carbon source
L-Citrulline
N.D.
-0.1
-0.1
-0.1
-0.5
carbon source
L-Valine (C)
N.D.
-0.1
-0.1
-0.3
-0.2
carbon source
acetate (C)
N.D.
-0.3
-0.0
-0.0
-0.3
stress
acetate 34 mM
N.D.
+0.1
+0.0
-0.4
-0.2
carbon source
L-Citrulline
N.D.
-0.2
+0.2
-0.1
-0.4
carbon source
propionate (C)
N.D.
-0.1
+0.0
+0.1
-0.4
carbon source
L-Citrulline
N.D.
-0.5
-0.1
+0.2
-0.1
carbon source
L-Tryptophan (C)
N.D.
-0.1
-0.3
+0.2
-0.1
survival
4C survival; 672 hrs
N.D.
+0.1
-0.4
-0.3
+0.3
carbon source
Cytidine (C)
N.D.
-0.7
+0.5
+0.1
-0.0
stress
Paraquat dichloride 0.032 mg/mL
N.D.
+0.1
-0.3
-0.2
+0.3
stress
Thallium(I) acetate 0.016 mg/ml
N.D.
-0.1
-0.2
+0.1
+0.3
stress
Cisplatin 0.006 mg/ml
N.D.
+0.2
-0.6
-0.0
+0.5
carbon source
L-Asparagine (C)
N.D.
+0.0
-0.3
+0.4
+0.0
motility
outer cut, LB soft agar motility assay
N.D.
+0.1
-0.0
+0.3
-0.2
carbon source
D-Glucose
N.D.
+0.0
+0.1
-0.2
+0.4
carbon source
L-Ornithine
N.D.
-0.1
+0.7
-0.2
-0.0
carbon source
L-Malic (C)
N.D.
+0.0
-0.2
+0.2
+0.3
stress
1-ethyl-3-methylimidazolium acetate 30 mM
N.D.
-0.2
+0.3
+0.1
+0.1
stress
D-Cycloserine 0.1 mg/ml
N.D.
-0.1
+0.3
+0.2
+0.2
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