Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_06075 and AO353_06080 are separated by 637 nucleotidesAO353_06080 and AO353_06085 are separated by 75 nucleotidesAO353_06085 and AO353_06090 are separated by 138 nucleotidesAO353_06090 and AO353_06095 are separated by 109 nucleotides AO353_06075: AO353_06075 - 16S ribosomal RNA, at 1,353,651 to 1,355,197 _06075 AO353_06080: AO353_06080 - methylmalonate-semialdehyde dehydrogenase, at 1,355,835 to 1,357,328 _06080 AO353_06085: AO353_06085 - omega amino acid--pyruvate aminotransferase, at 1,357,404 to 1,358,753 _06085 AO353_06090: AO353_06090 - LysR family transcriptional regulator, at 1,358,892 to 1,359,812 _06090 AO353_06095: AO353_06095 - TetR family transcriptional regulator, at 1,359,922 to 1,360,572 _06095
Group Condition AO353_06075 AO353_06080 AO353_06085 AO353_06090 AO353_06095
nitrogen source Uridine (N) N.D. -0.9 -3.8 -3.9 +0.1
nitrogen source Thymine (N) N.D. -0.3 -2.7 -2.3 -0.0
carbon source Uridine (C) N.D. -1.7 -1.1 -1.2 +0.1
pH Minimal media pH9 N.D. -0.4 -0.4 -0.3 -0.2
pH Minimal media pH9 N.D. -0.1 -0.6 -0.6 +0.3
motility outer cut, LB soft agar motility assay N.D. +0.1 +0.2 -0.7 -0.5
carbon source Trisodium citrate (C) N.D. -0.1 -0.2 -0.3 -0.2
carbon source L-Leucine (C) N.D. -0.3 +0.2 -0.5 -0.3
carbon source m-Inositol (C) N.D. -0.0 -0.6 -0.2 -0.0
carbon source m-Inositol (C) N.D. -0.0 -0.8 -0.0 -0.0
carbon source L-Citrulline N.D. -0.1 -0.1 -0.1 -0.5
carbon source L-Valine (C) N.D. -0.1 -0.1 -0.3 -0.2
carbon source acetate (C) N.D. -0.3 -0.0 -0.0 -0.3
stress acetate 34 mM N.D. +0.1 +0.0 -0.4 -0.2
carbon source L-Citrulline N.D. -0.2 +0.2 -0.1 -0.4
carbon source propionate (C) N.D. -0.1 +0.0 +0.1 -0.4
carbon source L-Citrulline N.D. -0.5 -0.1 +0.2 -0.1
carbon source L-Tryptophan (C) N.D. -0.1 -0.3 +0.2 -0.1
survival 4C survival; 672 hrs N.D. +0.1 -0.4 -0.3 +0.3
carbon source Cytidine (C) N.D. -0.7 +0.5 +0.1 -0.0
stress Paraquat dichloride 0.032 mg/mL N.D. +0.1 -0.3 -0.2 +0.3
stress Thallium(I) acetate 0.016 mg/ml N.D. -0.1 -0.2 +0.1 +0.3
stress Cisplatin 0.006 mg/ml N.D. +0.2 -0.6 -0.0 +0.5
carbon source L-Asparagine (C) N.D. +0.0 -0.3 +0.4 +0.0
motility outer cut, LB soft agar motility assay N.D. +0.1 -0.0 +0.3 -0.2
carbon source D-Glucose N.D. +0.0 +0.1 -0.2 +0.4
carbon source L-Ornithine N.D. -0.1 +0.7 -0.2 -0.0
carbon source L-Malic (C) N.D. +0.0 -0.2 +0.2 +0.3
stress 1-ethyl-3-methylimidazolium acetate 30 mM N.D. -0.2 +0.3 +0.1 +0.1
stress D-Cycloserine 0.1 mg/ml N.D. -0.1 +0.3 +0.2 +0.2
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