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Gene
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Nearby
Cofit
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_06060 and AO353_06065 are separated by 227 nucleotides
AO353_06065 and AO353_06070 are separated by 34 nucleotides
AO353_06070 and AO353_06075 are separated by 72 nucleotides
AO353_06075 and AO353_06080 are separated by 637 nucleotides
AO353_06060: AO353_06060 - 23S ribosomal RNA, at 1,350,252 to 1,353,164
_06060
AO353_06065: AO353_06065 - tRNA-Ala, at 1,353,392 to 1,353,467
_06065
AO353_06070: AO353_06070 - tRNA-Ile, at 1,353,502 to 1,353,578
_06070
AO353_06075: AO353_06075 - 16S ribosomal RNA, at 1,353,651 to 1,355,197
_06075
AO353_06080: AO353_06080 - methylmalonate-semialdehyde dehydrogenase, at 1,355,835 to 1,357,328
_06080
Group
Condition
AO353
_06060
AO353
_06065
AO353
_06070
AO353
_06075
AO353
_06080
carbon source
Uridine (C)
N.D.
N.D.
N.D.
N.D.
-1.7
nitrogen source
Uridine (N)
N.D.
N.D.
N.D.
N.D.
-0.9
carbon source
Cytidine (C)
N.D.
N.D.
N.D.
N.D.
-0.7
carbon source
L-Citrulline
N.D.
N.D.
N.D.
N.D.
-0.5
pH
Minimal media pH9
N.D.
N.D.
N.D.
N.D.
-0.4
carbon source
acetate (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
acetate (C)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
L-Leucine (C)
N.D.
N.D.
N.D.
N.D.
-0.3
nitrogen source
Thymine (N)
N.D.
N.D.
N.D.
N.D.
-0.3
carbon source
D-Glucose
N.D.
N.D.
N.D.
N.D.
-0.2
nitrogen source
D-Glucosamine Hydrochloride (N)
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
a-Ketoglutaric (C)
N.D.
N.D.
N.D.
N.D.
-0.2
stress
copper (II) chloride 2.5 mM
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
D-Ribose (C)
N.D.
N.D.
N.D.
N.D.
-0.2
pH
Minimal media pH7
N.D.
N.D.
N.D.
N.D.
-0.2
stress
Choline chloride 268.5 mM
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
L-Citrulline
N.D.
N.D.
N.D.
N.D.
-0.2
stress
Chlorite 0.16 mM
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
Fumarate (C)
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
L-Histidine (C)
N.D.
N.D.
N.D.
N.D.
-0.2
stress
Cholin acetate 10 mM
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
L-Isoleucine (C)
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
L-Phenylalanine (C)
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
L-Aspartic Acid (C)
N.D.
N.D.
N.D.
N.D.
-0.2
carbon source
Trisodium citrate (C)
N.D.
N.D.
N.D.
N.D.
-0.2
nitrogen source
L-Glutamic (N)
N.D.
N.D.
N.D.
N.D.
-0.2
nitrogen source
L-Threonine (N)
N.D.
N.D.
N.D.
N.D.
-0.2
stress
Cisplatin 0.006 mg/ml
N.D.
N.D.
N.D.
N.D.
+0.2
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
N.D.
N.D.
+0.2
stress
Fusidic 0.125 mg/ml
N.D.
N.D.
N.D.
N.D.
+0.3
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