Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_05970 and AO353_05975 overlap by 4 nucleotidesAO353_05975 and AO353_05980 are separated by 280 nucleotidesAO353_05980 and AO353_05985 are separated by 249 nucleotidesAO353_05985 and AO353_05990 are separated by 10 nucleotides AO353_05970: AO353_05970 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data), at 1,326,547 to 1,327,413 _05970 AO353_05975: AO353_05975 - Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data), at 1,327,410 to 1,328,075 _05975 AO353_05980: AO353_05980 - cupin, at 1,328,356 to 1,328,700 _05980 AO353_05985: AO353_05985 - 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31) (from data), at 1,328,950 to 1,329,834 _05985 AO353_05990: AO353_05990 - Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) (from data), at 1,329,845 to 1,331,368 _05990
Group Condition AO353_05970 AO353_05975 AO353_05980 AO353_05985 AO353_05990
carbon source L-Tryptophan (C) -3.0 -3.3 -2.5 -0.4 -0.3
carbon source L-Valine (C) -0.1 -0.5 +0.1 -3.7 -3.5
nitrogen source L-Tryptophan (N) -3.3 -3.2 -0.5 -0.4 -0.0
carbon source L-Isoleucine (C) +0.1 -0.5 -0.1 -1.4 -0.5
stress Cisplatin 0.006 mg/ml -0.3 -0.5 -0.3 -0.4 +0.1
carbon source L-Aspartic Acid (C) -0.2 -0.2 -0.1 -0.3 -0.4
carbon source L-Ornithine -0.6 -0.0 +0.1 -0.6 -0.1
carbon source L-Leucine (C) -0.1 -0.2 +0.0 -0.5 -0.3
carbon source L-Phenylalanine (C) -0.1 -0.0 -0.2 -0.7 -0.2
pH Minimal media pH9 -0.4 -0.1 +0.1 -0.5 -0.0
nitrogen source Gly-Glu (N) -0.1 -0.2 -0.5 -0.3 +0.4
stress copper (II) chloride 2.5 mM -0.3 -0.1 -0.2 -0.2 +0.3
carbon source D-Serine (C) -0.3 +0.2 -0.5 -0.2 +0.3
stress Cisplatin 0.006 mg/ml -0.2 -0.3 -0.2 -0.4 +0.4
stress Nickel (II) chloride 0.625 mM -0.6 +0.1 -0.3 +0.1 +0.3
carbon source D-Glucose -0.3 +0.2 +0.2 -0.4 +0.2
motility outer cut, LB soft agar motility assay +0.1 +0.1 -0.2 -0.5 +0.4
carbon source L-Citrulline +0.4 -0.0 -0.1 -0.5 +0.4
radiation Ionizing radiation, 126.196 Gy, +0.4 +0.3 -0.2 -0.1 -0.2
nitrogen source L-Glutamine (N) +0.4 -0.2 -0.1 +0.4 -0.3
carbon source D-Alanine (C) +0.1 +0.2 +0.2 -0.5 +0.2
carbon source D-Glucose -0.2 +0.3 -0.2 +0.2 +0.2
carbon source acetate (C) +0.4 +0.5 -0.8 +0.2 +0.3
anaerobic N1B4wt with N2E3m denitrifying replicate C -0.0 +0.3 +0.2 -0.3 +0.3
motility outer cut, LB soft agar motility assay +0.7 +0.1 +0.2 -0.2 -0.2
motility outer cut, LB soft agar motility assay +0.6 +0.2 +0.2 +0.3 -0.4
stress Choline chloride 268.5 mM +0.4 +0.1 +0.2 +0.2 +0.3
stress Doxycycline hyclate 0.0006 mg/ml +0.9 +0.1 +0.4 +0.2 -0.3
anaerobic Anaerobic, acetate donor; nitrate and iron +0.2 +0.5 -0.1 +0.4 +0.3
carbon source L-Citrulline +0.2 +0.1 +0.2 +0.4 +0.5
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