Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_05955 and AO353_05960 are separated by 18 nucleotidesAO353_05960 and AO353_05965 are separated by 77 nucleotidesAO353_05965 and AO353_05970 are separated by 67 nucleotidesAO353_05970 and AO353_05975 overlap by 4 nucleotides AO353_05955: AO353_05955 - Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data), at 1,323,469 to 1,323,960 _05955 AO353_05960: AO353_05960 - anthranilate dioxygenase reductase, at 1,323,979 to 1,325,001 _05960 AO353_05965: AO353_05965 - aromatic amino acid transporter, at 1,325,079 to 1,326,479 _05965 AO353_05970: AO353_05970 - Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data), at 1,326,547 to 1,327,413 _05970 AO353_05975: AO353_05975 - Kynurenine formamidase, bacterial (EC 3.5.1.9) (from data), at 1,327,410 to 1,328,075 _05975
Group Condition AO353_05955 AO353_05960 AO353_05965 AO353_05970 AO353_05975
nitrogen source L-Tryptophan (N) -2.5 -2.2 -1.3 -3.3 -3.2
carbon source L-Tryptophan (C) -1.8 -1.4 +0.7 -3.0 -3.3
stress Cisplatin 0.006 mg/ml -0.4 -0.5 +0.2 -0.3 -0.5
carbon source L-Valine (C) -0.2 -0.3 +0.1 -0.1 -0.5
carbon source L-Isoleucine (C) +0.0 -0.2 -0.2 +0.1 -0.5
stress Cisplatin 0.006 mg/ml -0.2 -0.3 +0.4 -0.2 -0.3
stress Nickel (II) chloride 0.625 mM +0.1 +0.1 -0.1 -0.6 +0.1
stress Tetracycline 0.0016 mg/ml -0.3 +0.0 -0.2 +0.2 -0.2
carbon source L-Histidine (C) +0.2 -0.1 -0.1 -0.3 -0.2
carbon source D-Trehalose (C) +0.2 -0.2 +0.1 -0.0 -0.3
carbon source L-Aspartic Acid (C) +0.2 -0.0 +0.1 -0.5 -0.2
denitrifying Nitrate reduction, replicate B +0.1 +0.2 -0.2 -0.3 -0.1
carbon source D-Glucose -0.3 -0.1 +0.2 -0.3 +0.2
carbon source L-Citrulline -0.5 +0.0 +0.2 -0.1 +0.1
carbon source D-Glucose -0.3 -0.2 +0.1 -0.2 +0.3
stress 1-ethyl-3-methylimidazolium acetate 20 mM +0.1 +0.1 -0.0 -0.5 +0.2
stress Choline Lysine 12 mM +0.2 +0.0 +0.0 -0.4 +0.2
stress methylglyoxal 0.009 vol% +0.4 -0.0 +0.2 -0.1 -0.3
nitrogen source L-tyrosine (N) +0.1 +0.5 -0.5 -0.0 +0.1
carbon source L-Ornithine -0.1 +0.2 +0.2 -0.1 +0.2
carbon source L-Citrulline +0.2 -0.2 +0.1 +0.4 -0.0
carbon source L-Citrulline +0.2 +0.1 +0.3 -0.2 +0.0
nitrogen source L-Glutamine (N) +0.2 +0.1 +0.0 +0.4 -0.2
motility outer cut, LB soft agar motility assay -0.1 -0.1 +0.1 +0.7 +0.1
carbon source acetate (C) -0.2 +0.0 +0.1 +0.4 +0.5
radiation Ionizing radiation, 126.196 Gy, +0.2 -0.0 +0.1 +0.4 +0.3
stress Benzalkonium Chloride 0.012 mg/ml +0.4 +0.3 -0.0 +0.3 +0.2
stress Doxycycline hyclate 0.0006 mg/ml +0.3 +0.1 -0.0 +0.9 +0.1
anaerobic Anaerobic, acetate donor; nitrate and iron +0.3 +0.1 +0.3 +0.2 +0.5
motility outer cut, LB soft agar motility assay +0.8 +0.6 -0.1 +0.6 +0.2
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