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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_05945 and AO353_05950 are separated by 562 nucleotides
AO353_05950 and AO353_05955 are separated by 2 nucleotides
AO353_05955 and AO353_05960 are separated by 18 nucleotides
AO353_05960 and AO353_05965 are separated by 77 nucleotides
AO353_05945: AO353_05945 - AraC family transcriptional regulator, at 1,320,502 to 1,321,515
_05945
AO353_05950: AO353_05950 - Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1)
(from data)
, at 1,322,078 to 1,323,466
_05950
AO353_05955: AO353_05955 - Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1)
(from data)
, at 1,323,469 to 1,323,960
_05955
AO353_05960: AO353_05960 - anthranilate dioxygenase reductase, at 1,323,979 to 1,325,001
_05960
AO353_05965: AO353_05965 - aromatic amino acid transporter, at 1,325,079 to 1,326,479
_05965
Group
Condition
AO353
_05945
AO353
_05950
AO353
_05955
AO353
_05960
AO353
_05965
nitrogen source
L-Tryptophan (N)
-2.8
-2.6
-2.5
-2.2
-1.3
carbon source
L-Tryptophan (C)
-1.2
-1.4
-1.8
-1.4
+0.7
survival
4C survival; 672 hrs
-0.5
-0.2
-0.3
+0.1
-0.0
carbon source
Ethanol (C)
-0.3
-0.2
-0.0
-0.0
-0.2
stress
Lomefloxacin 0.001 mM
-0.6
+0.1
-0.0
-0.0
-0.2
stress
Sisomicin 0.008 mg/ml
-0.3
+0.1
-0.1
-0.1
-0.3
stress
Tetracycline 0.0016 mg/ml
-0.1
-0.0
-0.3
+0.0
-0.2
nitrogen source
Parabanic Acid (N)
-0.6
+0.1
-0.2
+0.0
+0.0
carbon source
L-Citrulline
-0.5
+0.2
-0.5
+0.0
+0.2
stress
perchlorate 75 mM
-0.2
-0.1
-0.2
-0.1
+0.1
stress
methylglyoxal 0.008 vol%
-0.2
+0.1
-0.1
-0.2
-0.2
carbon source
acetate (C)
-0.4
+0.0
-0.2
+0.0
+0.1
stress
Cisplatin 0.006 mg/ml
+0.1
-0.3
-0.2
-0.3
+0.4
stress
Cisplatin 0.006 mg/ml
+0.3
+0.1
-0.4
-0.5
+0.2
stress
sodium fluoride 6.25 mM
+0.4
-0.2
-0.3
+0.0
-0.1
carbon source
D-Glucose
-0.1
+0.0
-0.3
-0.1
+0.2
carbon source
L-Citrulline
-0.2
+0.2
+0.0
-0.3
+0.1
stress
Doxycycline hyclate 0.0006 mg/ml
-0.2
-0.1
+0.3
+0.1
-0.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.3
-0.3
+0.3
+0.1
+0.3
carbon source
L-Valine (C)
+0.4
+0.2
-0.2
-0.3
+0.1
pH
Minimal media pH9
+0.2
-0.2
+0.3
-0.0
-0.1
denitrifying
Nitrate reduction, replicate B
-0.1
+0.2
+0.1
+0.2
-0.2
nitrogen source
L-tyrosine (N)
-0.0
+0.1
+0.1
+0.5
-0.5
stress
Thallium(I) acetate 0.016 mg/ml
+0.1
+0.2
-0.1
-0.2
+0.1
stress
Benzalkonium Chloride 0.01 mg/ml
+0.3
+0.1
-0.0
+0.2
-0.2
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.3
-0.1
+0.2
+0.0
+0.0
carbon source
L-Citrulline
-0.0
-0.1
+0.2
+0.1
+0.3
stress
Benzalkonium Chloride 0.012 mg/ml
+0.1
+0.0
+0.4
+0.3
-0.0
stress
methylglyoxal 0.009 vol%
+0.3
+0.3
+0.4
-0.0
+0.2
motility
outer cut, LB soft agar motility assay
-0.2
+0.5
+0.8
+0.6
-0.1
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