Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_05930 and AO353_05935 are separated by 205 nucleotidesAO353_05935 and AO353_05940 are separated by 176 nucleotidesAO353_05940 and AO353_05945 are separated by 21 nucleotidesAO353_05945 and AO353_05950 are separated by 562 nucleotides AO353_05930: AO353_05930 - L-tryptophan transporter (from data), at 1,316,962 to 1,318,374 _05930 AO353_05935: AO353_05935 - Kynureninase (EC 3.7.1.3) (from data), at 1,318,580 to 1,319,830 _05935 AO353_05940: AO353_05940 - AsnC family transcriptional regulator, at 1,320,007 to 1,320,480 _05940 AO353_05945: AO353_05945 - AraC family transcriptional regulator, at 1,320,502 to 1,321,515 _05945 AO353_05950: AO353_05950 - Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data), at 1,322,078 to 1,323,466 _05950
Group Condition AO353_05930 AO353_05935 AO353_05940 AO353_05945 AO353_05950
nitrogen source L-Tryptophan (N) -1.5 -3.2 -2.3 -2.8 -2.6
carbon source L-Tryptophan (C) -0.7 -2.8 -2.6 -1.2 -1.4
stress Sisomicin 0.008 mg/ml +0.0 -0.5 -0.4 -0.3 +0.1
anaerobic Anaerobic, acetate donor; nitrate and iron +0.1 -0.1 -0.4 -0.3 -0.3
survival 4C survival; 672 hrs +0.2 -0.2 -0.2 -0.5 -0.2
carbon source Ethanol (C) -0.1 -0.2 +0.1 -0.3 -0.2
carbon source pyruvate (C) +0.2 +0.1 -0.1 -0.3 -0.2
stress Cisplatin 0.006 mg/ml -0.3 -0.2 -0.1 +0.3 +0.1
nitrogen source Parabanic Acid (N) +0.3 -0.3 +0.3 -0.6 +0.1
denitrifying Nitrate reduction, replicate B +0.2 -0.2 -0.1 -0.1 +0.2
stress Lomefloxacin 0.001 mM +0.1 +0.2 +0.2 -0.6 +0.1
pH Minimal media pH9 +0.0 -0.2 +0.2 +0.2 -0.2
nitrogen source L-Glutamic (N) +0.1 +0.0 -0.4 +0.2 +0.1
stress Cisplatin 0.006 mg/ml +0.0 +0.3 -0.1 +0.1 -0.3
carbon source acetate (C) +0.2 -0.0 +0.3 -0.4 +0.0
carbon source L-Citrulline +0.0 +0.1 +0.4 -0.5 +0.2
stress 1-ethyl-3-methylimidazolium acetate 30 mM -0.0 -0.2 +0.2 +0.3 -0.1
stress Doxycycline hyclate 0.0002 mg/ml +0.0 -0.2 +0.2 +0.3 -0.1
stress Cobalt chloride 0.32 mM +0.1 +0.2 +0.3 -0.1 -0.1
stress Paraquat dichloride 0.032 mg/mL -0.1 -0.1 +0.4 +0.2 +0.1
stress sodium fluoride 6.25 mM +0.0 +0.1 +0.3 +0.4 -0.2
carbon source L-Citrulline -0.0 +0.1 +0.6 -0.2 +0.2
stress 1-ethyl-3-methylimidazolium acetate 15 mM +0.1 +0.2 +0.5 +0.2 -0.2
carbon source D-Ribose (C) +0.2 +0.8 -0.1 -0.0 -0.0
denitrifying Nitrate reduction, replicate C +0.1 +0.1 +0.5 +0.1 +0.1
carbon source Cytidine (C) +0.1 +0.6 +0.1 +0.2 -0.0
carbon source D-Ribose (C) +0.1 +0.9 +0.1 +0.1 -0.1
motility outer cut, LB soft agar motility assay +0.0 +0.2 +0.6 +0.2 +0.1
motility outer cut, LB soft agar motility assay +0.3 -0.1 +0.5 -0.2 +0.5
carbon source L-Valine (C) -0.1 +0.2 +0.4 +0.4 +0.2
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