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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_05915 and AO353_05920 overlap by 11 nucleotides
AO353_05920 and AO353_05925 are separated by 87 nucleotides
AO353_05925 and AO353_05930 are separated by 58 nucleotides
AO353_05930 and AO353_05935 are separated by 205 nucleotides
AO353_05915: AO353_05915 - antibiotic biosynthesis monooxygenase, at 1,314,848 to 1,315,162
_05915
AO353_05920: AO353_05920 - hypothetical protein, at 1,315,152 to 1,315,916
_05920
AO353_05925: AO353_05925 - LysR family transcriptional regulator, at 1,316,004 to 1,316,903
_05925
AO353_05930: AO353_05930 - L-tryptophan transporter
(from data)
, at 1,316,962 to 1,318,374
_05930
AO353_05935: AO353_05935 - Kynureninase (EC 3.7.1.3)
(from data)
, at 1,318,580 to 1,319,830
_05935
Group
Condition
AO353
_05915
AO353
_05920
AO353
_05925
AO353
_05930
AO353
_05935
nitrogen source
L-Tryptophan (N)
+0.1
-0.4
-0.4
-1.5
-3.2
carbon source
L-Tryptophan (C)
+0.3
+0.0
+0.2
-0.7
-2.8
stress
Sisomicin 0.008 mg/ml
-0.6
-0.2
-0.4
+0.0
-0.5
carbon source
L-Ornithine
-0.8
+0.1
-0.2
-0.1
-0.0
lb
LB
-0.3
-0.7
+0.1
-0.1
-0.1
carbon source
L-Ornithine
-0.9
+0.1
+0.0
+0.0
-0.1
denitrifying
Nitrate reduction, replicate B
-0.1
-0.3
-0.4
+0.2
-0.2
carbon source
L-Citrulline
+0.2
-0.7
-0.3
-0.0
+0.1
stress
Cisplatin 0.006 mg/ml
-0.4
-0.3
-0.3
+0.0
+0.3
stress
sodium fluoride 6.25 mM
-0.6
-0.4
+0.2
+0.0
+0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.2
-0.6
-0.1
+0.1
-0.1
carbon source
L-Ornithine
-0.6
+0.4
-0.1
-0.2
+0.2
survival
4C survival; 672 hrs
-0.6
+0.2
+0.3
+0.2
-0.2
stress
1-ethyl-3-methylimidazolium acetate 15 mM
-0.1
-0.4
+0.3
+0.1
+0.2
stress
Doxycycline hyclate 0.0006 mg/ml
+0.0
-0.2
+0.5
-0.2
-0.0
carbon source
L-Isoleucine (C)
+0.3
+0.2
-0.4
-0.1
-0.0
nitrogen source
Parabanic Acid (N)
+0.6
-0.3
-0.1
+0.3
-0.3
carbon source
L-Citrulline
+0.8
+0.2
-0.6
-0.2
-0.0
nitrogen source
Uridine (N)
+0.5
+0.2
+0.1
-0.1
-0.2
nitrogen source
NAG (N)
+0.7
+0.1
-0.0
-0.2
-0.1
carbon source
L-Leucine (C)
+0.7
+0.3
-0.4
-0.2
+0.2
nitrogen source
L-Arginine (N)
+0.5
-0.2
-0.0
+0.2
+0.2
carbon source
D-Ribose (C)
-0.2
+0.1
-0.1
+0.2
+0.8
carbon source
D-Serine (C)
+0.6
+0.3
+0.1
+0.0
-0.1
carbon source
L-Ornithine
+0.4
+0.3
+0.1
-0.2
+0.3
carbon source
D-Ribose (C)
-0.1
+0.1
+0.1
+0.1
+0.9
carbon source
Uridine (C)
+0.7
-0.1
+0.1
+0.1
+0.3
stress
methylglyoxal 0.008 vol%
+0.5
+0.5
-0.1
+0.1
+0.2
motility
outer cut, LB soft agar motility assay
+0.9
-0.2
+0.5
+0.3
-0.1
stress
Lomefloxacin 0.001 mM
+0.7
+0.4
+0.3
+0.1
+0.2
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