Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_05915 and AO353_05920 overlap by 11 nucleotidesAO353_05920 and AO353_05925 are separated by 87 nucleotidesAO353_05925 and AO353_05930 are separated by 58 nucleotidesAO353_05930 and AO353_05935 are separated by 205 nucleotides AO353_05915: AO353_05915 - antibiotic biosynthesis monooxygenase, at 1,314,848 to 1,315,162 _05915 AO353_05920: AO353_05920 - hypothetical protein, at 1,315,152 to 1,315,916 _05920 AO353_05925: AO353_05925 - LysR family transcriptional regulator, at 1,316,004 to 1,316,903 _05925 AO353_05930: AO353_05930 - L-tryptophan transporter (from data), at 1,316,962 to 1,318,374 _05930 AO353_05935: AO353_05935 - Kynureninase (EC 3.7.1.3) (from data), at 1,318,580 to 1,319,830 _05935
Group Condition AO353_05915 AO353_05920 AO353_05925 AO353_05930 AO353_05935
nitrogen source L-Tryptophan (N) +0.1 -0.4 -0.4 -1.5 -3.2
carbon source L-Tryptophan (C) +0.3 +0.0 +0.2 -0.7 -2.8
stress Sisomicin 0.008 mg/ml -0.6 -0.2 -0.4 +0.0 -0.5
carbon source L-Ornithine -0.8 +0.1 -0.2 -0.1 -0.0
lb LB -0.3 -0.7 +0.1 -0.1 -0.1
carbon source L-Ornithine -0.9 +0.1 +0.0 +0.0 -0.1
denitrifying Nitrate reduction, replicate B -0.1 -0.3 -0.4 +0.2 -0.2
carbon source L-Citrulline +0.2 -0.7 -0.3 -0.0 +0.1
stress Cisplatin 0.006 mg/ml -0.4 -0.3 -0.3 +0.0 +0.3
stress sodium fluoride 6.25 mM -0.6 -0.4 +0.2 +0.0 +0.1
anaerobic Anaerobic, acetate donor; nitrate and iron +0.2 -0.6 -0.1 +0.1 -0.1
carbon source L-Ornithine -0.6 +0.4 -0.1 -0.2 +0.2
survival 4C survival; 672 hrs -0.6 +0.2 +0.3 +0.2 -0.2
stress 1-ethyl-3-methylimidazolium acetate 15 mM -0.1 -0.4 +0.3 +0.1 +0.2
stress Doxycycline hyclate 0.0006 mg/ml +0.0 -0.2 +0.5 -0.2 -0.0
carbon source L-Isoleucine (C) +0.3 +0.2 -0.4 -0.1 -0.0
nitrogen source Parabanic Acid (N) +0.6 -0.3 -0.1 +0.3 -0.3
carbon source L-Citrulline +0.8 +0.2 -0.6 -0.2 -0.0
nitrogen source Uridine (N) +0.5 +0.2 +0.1 -0.1 -0.2
nitrogen source NAG (N) +0.7 +0.1 -0.0 -0.2 -0.1
carbon source L-Leucine (C) +0.7 +0.3 -0.4 -0.2 +0.2
nitrogen source L-Arginine (N) +0.5 -0.2 -0.0 +0.2 +0.2
carbon source D-Ribose (C) -0.2 +0.1 -0.1 +0.2 +0.8
carbon source D-Serine (C) +0.6 +0.3 +0.1 +0.0 -0.1
carbon source L-Ornithine +0.4 +0.3 +0.1 -0.2 +0.3
carbon source D-Ribose (C) -0.1 +0.1 +0.1 +0.1 +0.9
carbon source Uridine (C) +0.7 -0.1 +0.1 +0.1 +0.3
stress methylglyoxal 0.008 vol% +0.5 +0.5 -0.1 +0.1 +0.2
motility outer cut, LB soft agar motility assay +0.9 -0.2 +0.5 +0.3 -0.1
stress Lomefloxacin 0.001 mM +0.7 +0.4 +0.3 +0.1 +0.2
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