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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_05845 and AO353_05850 are separated by 257 nucleotides
AO353_05850 and AO353_05855 are separated by 223 nucleotides
AO353_05855 and AO353_05860 are separated by 1666 nucleotides
AO353_05860 and AO353_05865 overlap by 1 nucleotides
AO353_05845: AO353_05845 - phosphoglycerate kinase, at 1,290,558 to 1,291,232
_05845
AO353_05850: AO353_05850 - chemotaxis protein, at 1,291,490 to 1,293,409
_05850
AO353_05855: AO353_05855 - toxin, at 1,293,633 to 1,296,194
_05855
AO353_05860: AO353_05860 - toxin, at 1,297,861 to 1,300,308
_05860
AO353_05865: AO353_05865 - toxin, at 1,300,308 to 1,304,795
_05865
Group
Condition
AO353
_05845
AO353
_05850
AO353
_05855
AO353
_05860
AO353
_05865
motility
outer cut, LB soft agar motility assay
-0.7
-0.8
+0.1
+0.1
+0.1
carbon source
L-Alanine (C)
-0.4
-0.3
-0.3
-0.2
-0.1
carbon source
D-Glucose
-0.1
-0.6
-0.2
-0.1
-0.1
stress
Cisplatin 0.006 mg/ml
-0.4
-0.3
-0.1
-0.2
+0.1
motility
outer cut, LB soft agar motility assay
-0.5
-1.0
+0.3
+0.0
+0.3
carbon source
L-Ornithine
-0.0
-0.5
-0.0
-0.1
-0.1
stress
Cobalt chloride 0.32 mM
-0.1
-0.3
-0.1
-0.1
-0.0
motility
outer cut, LB soft agar motility assay
-0.5
-0.7
+0.1
+0.2
+0.2
carbon source
L-Ornithine
+0.1
-0.1
-0.3
-0.2
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.4
-0.4
+0.1
+0.1
+0.0
stress
methylglyoxal 0.009 vol%
-0.1
-0.2
-0.2
+0.1
-0.0
carbon source
L-Citrulline
+0.1
-0.2
-0.1
-0.2
-0.1
carbon source
acetate (C)
+0.1
-0.2
-0.2
-0.2
+0.0
stress
Thallium(I) acetate 0.016 mg/ml
-0.2
-0.3
+0.1
+0.0
+0.1
stress
Thallium(I) acetate 0.008 mg/ml
-0.1
-0.3
+0.1
-0.1
+0.0
stress
Thallium(I) acetate 0.016 mg/ml
-0.1
-0.4
+0.1
+0.1
+0.0
lb
LB
-0.3
-0.1
+0.2
+0.0
+0.1
carbon source
L-Citrulline
+0.3
-0.3
-0.1
+0.1
-0.1
carbon source
L-Citrulline
-0.1
-0.2
+0.0
+0.1
+0.2
carbon source
L-Serine (C)
+0.1
-0.3
-0.1
+0.2
+0.2
stress
copper (II) chloride 2.5 mM
+0.2
+0.2
-0.2
+0.2
+0.1
survival
4C survival; 672 hrs
+0.4
-0.2
+0.1
+0.1
+0.0
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.1
+0.2
+0.1
+0.2
+0.0
stress
Gentamicin 0.006 mg/ml
-0.1
+0.5
+0.1
+0.1
+0.0
pH
Minimal media pH9
-0.1
+0.3
+0.2
+0.1
+0.1
stress
nitrate 200 mM
+0.1
+0.5
+0.1
-0.1
-0.0
carbon source
Ethanol (C)
-0.1
+0.3
+0.1
+0.2
+0.1
pH
Minimal media pH9
-0.0
+0.3
+0.2
+0.3
-0.0
stress
Paraquat dichloride 0.032 mg/mL
+0.3
+0.3
+0.1
+0.2
+0.1
stress
Sisomicin 0.008 mg/ml
-0.2
+2.0
+0.0
-0.0
+0.0
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