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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_05815 and AO353_05820 are separated by 35 nucleotides
AO353_05820 and AO353_05825 are separated by 83 nucleotides
AO353_05825 and AO353_05830 overlap by 14 nucleotides
AO353_05830 and AO353_05835 are separated by 296 nucleotides
AO353_05815: AO353_05815 - hypothetical protein, at 1,285,020 to 1,285,313
_05815
AO353_05820: AO353_05820 - hypothetical protein, at 1,285,349 to 1,285,606
_05820
AO353_05825: AO353_05825 - hypothetical protein, at 1,285,690 to 1,286,586
_05825
AO353_05830: AO353_05830 - hypothetical protein, at 1,286,573 to 1,287,142
_05830
AO353_05835: AO353_05835 - hypothetical protein, at 1,287,439 to 1,288,848
_05835
Group
Condition
AO353
_05815
AO353
_05820
AO353
_05825
AO353
_05830
AO353
_05835
carbon source
L-Citrulline
N.D.
N.D.
-0.9
+0.1
+0.0
carbon source
L-Phenylalanine (C)
N.D.
N.D.
-0.3
-0.2
-0.4
carbon source
L-Ornithine
N.D.
N.D.
-0.5
-0.1
-0.1
survival
4C survival; 360 hrs
N.D.
N.D.
-0.3
-0.3
-0.2
carbon source
L-Citrulline
N.D.
N.D.
-0.2
+0.1
-0.5
carbon source
L-Isoleucine (C)
N.D.
N.D.
-0.4
+0.1
-0.2
stress
copper (II) chloride 2.5 mM
N.D.
N.D.
-0.1
-0.4
+0.0
nitrogen source
NAG (N)
N.D.
N.D.
-0.1
-0.2
-0.2
carbon source
L-Ornithine
N.D.
N.D.
-0.1
-0.4
-0.0
stress
Nickel (II) chloride 0.625 mM
N.D.
N.D.
-0.4
-0.1
+0.2
carbon source
L-Asparagine (C)
N.D.
N.D.
-0.3
+0.1
-0.2
stress
Tetracycline 0.0016 mg/ml
N.D.
N.D.
+0.2
-0.2
-0.3
carbon source
Ethanol (C)
N.D.
N.D.
-0.5
+0.1
+0.1
motility
outer cut, LB soft agar motility assay
N.D.
N.D.
+0.1
-0.1
-0.3
carbon source
Cytidine (C)
N.D.
N.D.
+0.2
-0.2
-0.1
carbon source
L-Serine (C)
N.D.
N.D.
-0.2
-0.1
+0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
N.D.
N.D.
+0.1
+0.2
-0.4
carbon source
D-Alanine (C)
N.D.
N.D.
-0.3
+0.2
+0.0
stress
Cisplatin 0.006 mg/ml
N.D.
N.D.
-0.3
-0.0
+0.4
denitrifying
Nitrate reduction, replicate C
N.D.
N.D.
-0.3
+0.1
+0.2
temperature
LB 10C
N.D.
N.D.
+0.3
-0.1
-0.1
stress
nitrate 200 mM
N.D.
N.D.
-0.3
+0.4
-0.0
stress
syringaldehyde 5 mM
N.D.
N.D.
+0.3
-0.2
-0.1
nitrogen source
Adenosine (N)
N.D.
N.D.
+0.2
+0.1
-0.2
carbon source
Carnitine Hydrochloride (C)
N.D.
N.D.
+0.3
-0.1
-0.1
stress
Cisplatin 0.006 mg/ml
N.D.
N.D.
+0.2
-0.2
+0.2
stress
benzoic 0.58 mg/ml
N.D.
N.D.
-0.1
-0.0
+0.3
pH
Minimal media pH9
N.D.
N.D.
+0.3
-0.2
+0.3
carbon source
L-Glutamine (C)
N.D.
N.D.
+0.3
+0.2
-0.0
stress
Doxycycline hyclate 0.0006 mg/ml
N.D.
N.D.
+0.3
+0.2
+0.2
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