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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_05770 and AO353_05775 are separated by 234 nucleotides
AO353_05775 and AO353_05780 are separated by 42 nucleotides
AO353_05780 and AO353_05785 are separated by 2 nucleotides
AO353_05785 and AO353_05790 are separated by 150 nucleotides
AO353_05770: AO353_05770 - hypothetical protein, at 1,275,048 to 1,275,902
_05770
AO353_05775: AO353_05775 - MFS transporter, at 1,276,137 to 1,277,477
_05775
AO353_05780: AO353_05780 - AMP-dependent synthetase, at 1,277,520 to 1,279,061
_05780
AO353_05785: AO353_05785 - acetyl-CoA acetyltransferase, at 1,279,064 to 1,280,242
_05785
AO353_05790: AO353_05790 - LuxR family transcriptional regulator, at 1,280,393 to 1,280,965
_05790
Group
Condition
AO353
_05770
AO353
_05775
AO353
_05780
AO353
_05785
AO353
_05790
stress
Ceftazidime 0.12 mg/ml
-0.7
+0.0
-0.0
-0.2
-0.0
nitrogen source
Gly-DL-Asp (N)
-0.2
-0.0
+0.2
-0.3
-0.2
carbon source
D-Glucose
-0.2
-0.3
+0.2
-0.1
-0.0
denitrifying
Nitrate reduction, replicate B
-0.3
-0.1
+0.0
+0.2
-0.3
carbon source
L-Ornithine
+0.2
-0.4
-0.2
+0.2
-0.2
carbon source
L-Citrulline
-0.1
-0.1
+0.3
-0.1
-0.2
stress
Rifampicin 0.005 mg/ml
+0.3
-0.0
-0.2
+0.0
-0.3
carbon source
L-Ornithine
-0.0
-0.3
+0.3
-0.2
+0.0
stress
Tetracycline 0.0016 mg/ml
+0.3
+0.0
+0.1
-0.1
-0.3
stress
Cobalt chloride 0.32 mM
+0.0
-0.0
-0.2
-0.3
+0.3
stress
methylglyoxal 0.009 vol%
-0.1
-0.1
+0.1
-0.2
+0.3
stress
Sisomicin 0.008 mg/ml
+0.3
+0.1
+0.1
-0.2
-0.1
stress
Cisplatin 0.006 mg/ml
-0.0
+0.1
-0.2
+0.4
-0.2
carbon source
L-Citrulline
-0.3
-0.1
+0.2
+0.1
+0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
-0.0
+0.1
-0.2
+0.4
motility
outer cut, LB soft agar motility assay
-0.3
-0.0
+0.4
-0.1
+0.3
carbon source
acetate (C)
+0.1
+0.2
-0.3
+0.0
+0.2
denitrifying
Nitrate reduction, replicate C
+0.0
+0.1
-0.3
+0.2
+0.3
stress
Vancomycin 1 mg/ml
+0.3
-0.0
+0.1
+0.3
-0.2
motility
outer cut, LB soft agar motility assay
+0.3
-0.0
+0.1
-0.3
+0.3
nitrogen source
Parabanic Acid (N)
-0.2
+0.2
+0.2
+0.1
+0.2
carbon source
L-Ornithine
-0.1
-0.1
+0.3
+0.2
+0.2
carbon source
L-Citrulline
-0.2
-0.3
+0.2
+0.5
+0.4
pH
Minimal media pH9
+0.3
+0.1
-0.0
+0.1
+0.3
motility
outer cut, LB soft agar motility assay
-0.1
+0.3
+0.3
+0.4
+0.3
carbon source
L-Valine (C)
+0.3
+0.0
+0.3
+0.0
+0.4
stress
Doxycycline hyclate 0.0006 mg/ml
+0.7
+0.1
+0.3
-0.0
+0.1
survival
4C survival; 360 hrs
+0.2
-0.0
+1.0
+0.0
+0.2
stress
Fusidic 0.125 mg/ml
+1.6
+0.1
+0.1
+0.1
-0.2
survival
4C survival; 672 hrs
+0.3
+0.0
+2.7
+0.0
-0.3
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