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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_05675 and AO353_05680 overlap by 8 nucleotides
AO353_05680 and AO353_05685 are separated by 7 nucleotides
AO353_05685 and AO353_05690 are separated by 118 nucleotides
AO353_05690 and AO353_05695 are separated by 185 nucleotides
AO353_05675: AO353_05675 - protein RnfH, at 1,254,458 to 1,254,775
_05675
AO353_05680: AO353_05680 - ribosome association toxin RatA, at 1,254,768 to 1,255,202
_05680
AO353_05685: AO353_05685 - symporter, at 1,255,210 to 1,256,613
_05685
AO353_05690: AO353_05690 - SsrA-binding protein, at 1,256,732 to 1,257,214
_05690
AO353_05695: AO353_05695 - transcriptional regulator PdhR, at 1,257,400 to 1,258,167
_05695
Group
Condition
AO353
_05675
AO353
_05680
AO353
_05685
AO353
_05690
AO353
_05695
pH
Minimal media pH9
+0.1
N.D.
+0.5
-3.2
-0.8
stress
Cobalt chloride 0.32 mM
-0.5
N.D.
-0.1
-2.3
-0.3
nitrogen source
L-Tryptophan (N)
-0.3
N.D.
-0.1
-2.5
-0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.2
N.D.
+0.1
-2.3
-0.7
carbon source
Fumarate (C)
+0.1
N.D.
-0.0
-2.5
-0.7
stress
Nickel (II) chloride 0.625 mM
-0.5
N.D.
-0.0
-2.5
+0.1
carbon source
acetate (C)
+0.9
N.D.
+0.2
-2.4
-1.6
carbon source
acetate (C)
+0.6
N.D.
+0.4
-1.9
-2.0
stress
Cholin acetate 19 mM
-0.4
N.D.
+0.1
-2.3
-0.2
carbon source
Putrescine (C)
+0.0
N.D.
+0.0
-2.1
-0.7
carbon source
succinate (C)
+0.2
N.D.
+0.0
-2.1
-0.8
carbon source
L-Tryptophan (C)
-0.0
N.D.
+0.1
-2.9
+0.1
carbon source
Trisodium citrate (C)
-0.0
N.D.
+0.1
-1.9
-0.9
nitrogen source
Parabanic Acid (N)
-0.1
N.D.
+0.3
-2.7
+0.0
carbon source
D-Trehalose (C)
-0.3
N.D.
+0.2
-1.7
-0.8
stress
Cobalt chloride 0.16 mM
+0.3
N.D.
-0.1
-2.7
-0.0
motility
outer cut, LB soft agar motility assay
-1.9
N.D.
-0.2
-0.5
+0.2
carbon source
propionate (C)
+0.8
N.D.
+0.3
-2.4
-1.1
stress
copper (II) chloride 2.5 mM
-0.2
N.D.
+0.2
-2.3
+0.1
motility
outer cut, LB soft agar motility assay
-1.4
N.D.
-0.4
-0.9
+0.4
pH
Minimal media pH7
+0.3
N.D.
+0.1
-2.6
+0.1
carbon source
propionate (C)
+0.8
N.D.
+0.4
-1.8
-1.4
motility
outer cut, LB soft agar motility assay
-0.1
N.D.
-0.2
-2.1
+0.8
carbon source
L-Isoleucine (C)
+0.5
N.D.
+0.3
-1.9
-0.4
pH
Minimal media pH9
+0.9
N.D.
+0.6
-2.4
-0.5
stress
perchlorate 75 mM
-0.4
N.D.
+1.4
-2.1
+0.1
carbon source
Glycerol (C)
-0.2
N.D.
-0.0
-1.5
+1.1
stress
methylglyoxal 0.009 vol%
+0.6
N.D.
+0.7
-2.0
+0.5
stress
nitrate 200 mM
-0.1
N.D.
+1.5
-1.4
-0.1
stress
Sisomicin 0.008 mg/ml
+0.9
N.D.
+2.6
-1.2
+0.4
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