Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_05675 and AO353_05680 overlap by 8 nucleotidesAO353_05680 and AO353_05685 are separated by 7 nucleotidesAO353_05685 and AO353_05690 are separated by 118 nucleotidesAO353_05690 and AO353_05695 are separated by 185 nucleotides AO353_05675: AO353_05675 - protein RnfH, at 1,254,458 to 1,254,775 _05675 AO353_05680: AO353_05680 - ribosome association toxin RatA, at 1,254,768 to 1,255,202 _05680 AO353_05685: AO353_05685 - symporter, at 1,255,210 to 1,256,613 _05685 AO353_05690: AO353_05690 - SsrA-binding protein, at 1,256,732 to 1,257,214 _05690 AO353_05695: AO353_05695 - transcriptional regulator PdhR, at 1,257,400 to 1,258,167 _05695
Group Condition AO353_05675 AO353_05680 AO353_05685 AO353_05690 AO353_05695
pH Minimal media pH9 +0.1 N.D. +0.5 -3.2 -0.8
stress Cobalt chloride 0.32 mM -0.5 N.D. -0.1 -2.3 -0.3
nitrogen source L-Tryptophan (N) -0.3 N.D. -0.1 -2.5 -0.3
nitrogen source D-Glucosamine Hydrochloride (N) -0.2 N.D. +0.1 -2.3 -0.7
carbon source Fumarate (C) +0.1 N.D. -0.0 -2.5 -0.7
stress Nickel (II) chloride 0.625 mM -0.5 N.D. -0.0 -2.5 +0.1
carbon source acetate (C) +0.9 N.D. +0.2 -2.4 -1.6
carbon source acetate (C) +0.6 N.D. +0.4 -1.9 -2.0
stress Cholin acetate 19 mM -0.4 N.D. +0.1 -2.3 -0.2
carbon source Putrescine (C) +0.0 N.D. +0.0 -2.1 -0.7
carbon source succinate (C) +0.2 N.D. +0.0 -2.1 -0.8
carbon source L-Tryptophan (C) -0.0 N.D. +0.1 -2.9 +0.1
carbon source Trisodium citrate (C) -0.0 N.D. +0.1 -1.9 -0.9
nitrogen source Parabanic Acid (N) -0.1 N.D. +0.3 -2.7 +0.0
carbon source D-Trehalose (C) -0.3 N.D. +0.2 -1.7 -0.8
stress Cobalt chloride 0.16 mM +0.3 N.D. -0.1 -2.7 -0.0
motility outer cut, LB soft agar motility assay -1.9 N.D. -0.2 -0.5 +0.2
carbon source propionate (C) +0.8 N.D. +0.3 -2.4 -1.1
stress copper (II) chloride 2.5 mM -0.2 N.D. +0.2 -2.3 +0.1
motility outer cut, LB soft agar motility assay -1.4 N.D. -0.4 -0.9 +0.4
pH Minimal media pH7 +0.3 N.D. +0.1 -2.6 +0.1
carbon source propionate (C) +0.8 N.D. +0.4 -1.8 -1.4
motility outer cut, LB soft agar motility assay -0.1 N.D. -0.2 -2.1 +0.8
carbon source L-Isoleucine (C) +0.5 N.D. +0.3 -1.9 -0.4
pH Minimal media pH9 +0.9 N.D. +0.6 -2.4 -0.5
stress perchlorate 75 mM -0.4 N.D. +1.4 -2.1 +0.1
carbon source Glycerol (C) -0.2 N.D. -0.0 -1.5 +1.1
stress methylglyoxal 0.009 vol% +0.6 N.D. +0.7 -2.0 +0.5
stress nitrate 200 mM -0.1 N.D. +1.5 -1.4 -0.1
stress Sisomicin 0.008 mg/ml +0.9 N.D. +2.6 -1.2 +0.4
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