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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_05320 and AO353_05325 are separated by 11 nucleotides
AO353_05325 and AO353_05330 are separated by 106 nucleotides
AO353_05330 and AO353_05335 are separated by 96 nucleotides
AO353_05335 and AO353_05340 overlap by 8 nucleotides
AO353_05320: AO353_05320 - hypothetical protein, at 1,171,232 to 1,171,582
_05320
AO353_05325: AO353_05325 - GntR family transcriptional regulator, at 1,171,594 to 1,172,340
_05325
AO353_05330: AO353_05330 - ABC transporter ATP-binding protein, at 1,172,447 to 1,174,174
_05330
AO353_05335: AO353_05335 - chemotaxis protein CheY, at 1,174,271 to 1,174,831
_05335
AO353_05340: AO353_05340 - histidine kinase, at 1,174,824 to 1,176,086
_05340
Group
Condition
AO353
_05320
AO353
_05325
AO353
_05330
AO353
_05335
AO353
_05340
motility
outer cut, LB soft agar motility assay
-0.8
-0.7
+0.0
N.D.
-2.4
motility
outer cut, LB soft agar motility assay
-1.3
+0.1
-0.3
N.D.
-1.5
survival
4C survival; 192 hrs
-0.1
-0.5
-0.2
N.D.
-1.4
carbon source
D-Lactate (C)
+0.1
-0.7
+0.1
N.D.
-1.8
carbon source
L-Asparagine (C)
-0.1
-0.8
-0.1
N.D.
-1.0
carbon source
D-Trehalose (C)
+0.1
-1.2
-0.1
N.D.
-0.9
carbon source
L-Asparagine (C)
-0.1
-0.6
-0.1
N.D.
-1.0
carbon source
D-Lactate (C)
+0.2
-0.6
+0.2
N.D.
-1.4
carbon source
propionate (C)
-0.0
-1.1
+0.2
N.D.
-0.6
carbon source
propionate (C)
-0.0
-1.1
+0.1
N.D.
-0.4
anaerobic
N1B4wt with N2E3m denitrifying replicate C
+0.1
-1.6
+0.2
N.D.
-0.1
pH
Minimal media pH9
-0.0
-1.5
-0.2
N.D.
+0.5
carbon source
L-Citrulline
+0.3
-1.7
-0.1
N.D.
+0.5
carbon source
L-Citrulline
-0.4
-1.0
-0.2
N.D.
+0.7
denitrifying
Nitrate reduction, replicate C
+0.3
-0.8
+0.2
N.D.
-0.6
pH
Minimal media pH9
-0.1
-1.4
-0.0
N.D.
+0.9
motility
outer cut, LB soft agar motility assay
+0.4
+0.0
+0.1
N.D.
-1.2
carbon source
L-Citrulline
+0.1
-1.6
+0.1
N.D.
+0.9
carbon source
D-Alanine (C)
+0.2
-0.8
-0.3
N.D.
+0.5
carbon source
L-Arginine (C)
+0.2
-1.1
-0.1
N.D.
+0.5
nitrogen source
L-Lysine (N)
+0.2
-1.1
+0.0
N.D.
+0.5
stress
Lomefloxacin 0.001 mM
-0.6
-0.3
-0.0
N.D.
+0.9
carbon source
acetate (C)
+0.3
+0.1
+0.4
N.D.
-0.9
carbon source
D-Ribose (C)
+0.2
-0.2
+0.1
N.D.
+1.2
carbon source
D-Ribose (C)
+0.0
-0.1
+0.1
N.D.
+1.4
stress
perchlorate 75 mM
-0.1
+0.3
+0.0
N.D.
+1.5
stress
Fusidic 0.125 mg/ml
+0.1
-0.0
+0.0
N.D.
+1.8
stress
Paraquat dichloride 0.032 mg/mL
+0.0
-0.4
+0.1
N.D.
+2.3
stress
nitrate 200 mM
+0.1
+0.3
+0.1
N.D.
+2.1
stress
Sisomicin 0.008 mg/ml
+0.0
-0.1
+0.4
N.D.
+4.5
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