Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_05185 and AO353_05190 are separated by 12 nucleotidesAO353_05190 and AO353_05195 are separated by 2 nucleotidesAO353_05195 and AO353_05200 are separated by 15 nucleotidesAO353_05200 and AO353_05205 are separated by 218 nucleotides AO353_05185: AO353_05185 - hypothetical protein, at 1,141,138 to 1,141,446 _05185 AO353_05190: AO353_05190 - PTS fructose transporter subunit IIA, at 1,141,459 to 1,141,923 _05190 AO353_05195: AO353_05195 - glmZ(sRNA)-inactivating NTPase, at 1,141,926 to 1,142,783 _05195 AO353_05200: AO353_05200 - phosphocarrier protein HPr, at 1,142,799 to 1,143,071 _05200 AO353_05205: AO353_05205 - peptidase PmbA, at 1,143,290 to 1,144,636 _05205
Group Condition AO353_05185 AO353_05190 AO353_05195 AO353_05200 AO353_05205
anaerobic N1B4wt with N2E3m denitrifying replicate C -1.9 N.D. -1.9 N.D. -1.2
carbon source propionate (C) -1.2 N.D. -2.7 N.D. -0.6
carbon source propionate (C) -0.7 N.D. -2.8 N.D. -0.4
stress Cisplatin 0.006 mg/ml -0.7 N.D. -0.7 N.D. -1.7
motility outer cut, LB soft agar motility assay -0.8 N.D. -1.1 N.D. -1.1
carbon source L-Valine (C) -0.5 N.D. -2.4 N.D. -0.1
motility outer cut, LB soft agar motility assay +0.3 N.D. -1.8 N.D. -0.9
motility outer cut, LB soft agar motility assay -0.3 N.D. -1.2 N.D. -0.8
pH Minimal media pH9 -1.0 N.D. -0.8 N.D. -0.6
denitrifying Nitrate reduction, replicate C -0.9 N.D. -0.2 N.D. -1.2
pH Minimal media pH9 -0.7 N.D. -0.8 N.D. -0.6
carbon source L-Leucine (C) +0.1 N.D. -1.7 N.D. -0.4
carbon source Ethanol (C) -0.5 N.D. -1.4 N.D. +0.1
carbon source Ethanol (C) -0.4 N.D. -1.2 N.D. +0.0
carbon source L-Citrulline (C) -0.2 N.D. -1.4 N.D. -0.0
carbon source m-Inositol (C) +0.2 N.D. -1.7 N.D. -0.1
carbon source m-Inositol (C) +0.2 N.D. -1.5 N.D. -0.3
carbon source acetate (C) +0.3 N.D. -1.3 N.D. -0.2
stress Cisplatin 0.006 mg/ml +0.4 N.D. -0.1 N.D. -1.6
carbon source L-Proline (C) +0.5 N.D. -1.1 N.D. -0.1
stress Sisomicin 0.008 mg/ml +0.9 N.D. -0.5 N.D. -0.7
stress methylglyoxal 0.009 vol% -1.0 N.D. +0.6 N.D. +0.3
stress methylglyoxal 0.008 vol% -0.4 N.D. +1.4 N.D. -0.4
stress Doxycycline hyclate 0.0002 mg/ml -0.8 N.D. +2.2 N.D. -0.0
stress Lomefloxacin 0.001 mM -0.0 N.D. +1.5 N.D. -0.1
stress Tetracycline 0.0016 mg/ml -0.5 N.D. +2.5 N.D. -0.2
anaerobic Anaerobic, acetate donor; nitrate and iron +0.5 N.D. +2.1 N.D. -0.4
stress Rifampicin 0.005 mg/ml -0.4 N.D. +2.7 N.D. +0.3
carbon source L-Serine (C) +0.3 N.D. +2.5 N.D. +0.2
stress Doxycycline hyclate 0.0006 mg/ml -1.2 N.D. +4.7 N.D. -0.2
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