Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_04870 and AO353_04875 are separated by 21 nucleotidesAO353_04875 and AO353_04880 overlap by 1 nucleotidesAO353_04880 and AO353_04885 are separated by 137 nucleotidesAO353_04885 and AO353_04890 are separated by 38 nucleotides AO353_04870: AO353_04870 - AraC family transcriptional regulator, at 1,075,648 to 1,076,523 _04870 AO353_04875: AO353_04875 - hypothetical protein, at 1,076,545 to 1,077,597 _04875 AO353_04880: AO353_04880 - TonB-dependent receptor, at 1,077,597 to 1,080,038 _04880 AO353_04885: AO353_04885 - multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase, at 1,080,176 to 1,081,876 _04885 AO353_04890: AO353_04890 - biopolymer transporter ExbB, at 1,081,915 to 1,082,559 _04890
Group Condition AO353_04870 AO353_04875 AO353_04880 AO353_04885 AO353_04890
anaerobic Anaerobic, acetate donor; nitrate and iron +0.3 -0.2 +0.1 -0.1 -1.3
carbon source D-Glucose +0.3 -0.3 -0.1 -0.5 -0.5
carbon source L-Alanine (C) +0.2 +0.3 -0.0 -0.9 -0.2
carbon source L-Valine (C) -0.2 -0.7 +0.3 +0.1 -0.1
survival 4C survival; 672 hrs +0.3 -0.3 +0.1 -0.7 +0.2
denitrifying Nitrate reduction, replicate C -1.2 +0.0 -0.1 +0.4 +0.4
motility outer cut, LB soft agar motility assay +0.4 -0.3 +0.1 +0.0 -0.6
nitrogen source Parabanic Acid (N) -0.3 +0.4 -0.1 +0.0 -0.4
stress Cisplatin 0.006 mg/ml +0.3 +0.0 -0.4 -0.6 +0.5
carbon source pyruvate (C) -0.6 -0.4 +0.0 +0.2 +0.5
stress Lomefloxacin 0.001 mM -0.6 +0.1 +0.2 -0.4 +0.5
carbon source L-Leucine (C) -0.2 -0.4 +0.1 +0.2 +0.2
pH Minimal media pH9 +0.1 -0.4 +0.0 -0.3 +0.5
denitrifying Nitrate reduction, replicate B -0.9 +0.3 +0.0 +0.4 +0.2
carbon source L-Citrulline -0.5 +0.5 -0.0 -0.0 +0.1
stress Thallium(I) acetate 0.008 mg/ml +0.3 +0.3 +0.0 -0.2 -0.3
motility outer cut, LB soft agar motility assay +0.4 +0.6 -0.0 +0.2 -1.1
stress Doxycycline hyclate 0.0006 mg/ml +0.4 +0.4 -0.0 -0.6 +0.1
carbon source m-Inositol (C) -0.4 +0.2 +0.1 +0.1 +0.4
carbon source L-Citrulline (C) +0.3 +0.2 +0.1 +0.3 -0.5
pH Minimal media pH7 +0.3 -0.4 +0.1 -0.1 +0.5
lb LB +0.3 +0.3 +0.0 +0.2 -0.4
carbon source L-Citrulline +0.4 +0.5 -0.2 +0.0 -0.0
pH Minimal media pH9 +0.2 +0.5 +0.1 +0.6 -0.3
stress Sisomicin 0.008 mg/ml +0.5 +0.5 +0.1 -0.1 +0.2
anaerobic N1B4wt with N2E3m denitrifying replicate C +0.3 +0.4 +0.0 +0.5 +0.3
carbon source L-Ornithine +3.2 +0.5 +0.1 -0.3 +0.5
carbon source L-Ornithine +3.5 +0.9 +0.3 -0.1 -0.4
carbon source L-Ornithine +6.5 +0.8 -0.0 +0.2 +0.0
carbon source L-Ornithine +7.4 +0.8 +0.1 -0.2 +0.2
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