Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E3

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500 ntAO353_04840 and AO353_04845 are separated by 188 nucleotidesAO353_04845 and AO353_04850 are separated by 737 nucleotidesAO353_04850 and AO353_04855 are separated by 62 nucleotidesAO353_04855 and AO353_04860 are separated by 248 nucleotides AO353_04840: AO353_04840 - RND transporter, at 1,068,964 to 1,070,475 _04840 AO353_04845: AO353_04845 - LysR family transcriptional regulator, at 1,070,664 to 1,071,632 _04845 AO353_04850: AO353_04850 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 1,072,370 to 1,073,344 _04850 AO353_04855: AO353_04855 - hypothetical protein, at 1,073,407 to 1,073,799 _04855 AO353_04860: AO353_04860 - hypothetical protein, at 1,074,048 to 1,074,557 _04860
Group Condition AO353_04840 AO353_04845 AO353_04850 AO353_04855 AO353_04860
stress Cholin acetate 38 mM -2.6 -1.9 -0.0 -0.0 -0.2
stress acetate 68 mM -2.8 -2.0 +0.1 -0.1 +0.2
stress 1-ethyl-3-methylimidazolium acetate 30 mM -2.5 -1.4 +0.1 +0.0 -0.0
stress copper (II) chloride 2.5 mM -2.2 +0.0 -0.1 -0.7 -0.2
stress acetate 34 mM -2.2 -0.7 -0.0 +0.2 +0.0
stress Cholin acetate 19 mM -1.9 -0.7 +0.1 +0.1 +0.1
carbon source acetate (C) -1.5 -0.0 +0.1 -0.5 +0.1
carbon source acetate (C) -2.1 -0.7 +0.4 +0.4 +0.3
anaerobic Anaerobic, acetate donor; nitrate and iron -0.8 -0.3 -0.1 -0.2 -0.0
stress 1-ethyl-3-methylimidazolium acetate 15 mM -1.3 +0.2 -0.1 -0.3 +0.1
stress copper (II) chloride 2.5 mM -1.5 -0.2 +0.3 +0.4 -0.1
stress Lomefloxacin 0.001 mM -0.2 +0.3 -0.4 -0.1 -0.4
stress 1-ethyl-3-methylimidazolium acetate 20 mM -1.2 +0.4 +0.1 +0.1 +0.1
denitrifying Nitrate reduction, replicate C -0.1 +0.3 -0.2 -0.4 +0.3
motility outer cut, LB soft agar motility assay -0.2 -0.4 -0.6 +0.7 +0.3
motility outer cut, LB soft agar motility assay +0.0 +0.3 -0.2 -0.9 +0.6
stress Spectinomycin 0.2 mg/ml -0.1 +0.8 -0.4 -0.3 -0.0
carbon source L-Citrulline -0.2 +0.6 -0.2 -0.4 +0.2
carbon source L-Ornithine -0.1 +0.0 -0.3 -0.2 +0.8
stress Gentamicin 0.006 mg/ml -0.5 +1.0 -0.1 +0.2 +0.1
carbon source L-Citrulline -0.1 +0.5 +0.4 +0.2 -0.3
stress Cobalt chloride 0.32 mM -0.1 +0.7 -0.3 +0.3 -0.0
carbon source L-Ornithine -0.2 -0.1 -0.1 +0.1 +1.0
carbon source L-Citrulline -0.1 +0.7 +0.4 +0.2 -0.3
stress Thallium(I) acetate 0.008 mg/ml +0.2 +0.9 -0.3 +0.1 +0.1
stress Paraquat dichloride 0.032 mg/mL -0.2 +1.3 +0.1 +0.1 +0.1
carbon source butyrate (C) +0.4 +1.0 -0.1 +0.2 +0.1
stress Sisomicin 0.008 mg/ml -0.8 +3.3 -0.5 -0.2 +0.1
carbon source propionate (C) +1.0 +4.6 +0.0 -0.2 -0.0
carbon source propionate (C) +1.4 +4.4 +0.2 +0.6 -0.3
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