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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_04840 and AO353_04845 are separated by 188 nucleotides
AO353_04845 and AO353_04850 are separated by 737 nucleotides
AO353_04850 and AO353_04855 are separated by 62 nucleotides
AO353_04855 and AO353_04860 are separated by 248 nucleotides
AO353_04840: AO353_04840 - RND transporter, at 1,068,964 to 1,070,475
_04840
AO353_04845: AO353_04845 - LysR family transcriptional regulator, at 1,070,664 to 1,071,632
_04845
AO353_04850: AO353_04850 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 1,072,370 to 1,073,344
_04850
AO353_04855: AO353_04855 - hypothetical protein, at 1,073,407 to 1,073,799
_04855
AO353_04860: AO353_04860 - hypothetical protein, at 1,074,048 to 1,074,557
_04860
Group
Condition
AO353
_04840
AO353
_04845
AO353
_04850
AO353
_04855
AO353
_04860
stress
Cholin acetate 38 mM
-2.6
-1.9
-0.0
-0.0
-0.2
stress
acetate 68 mM
-2.8
-2.0
+0.1
-0.1
+0.2
stress
1-ethyl-3-methylimidazolium acetate 30 mM
-2.5
-1.4
+0.1
+0.0
-0.0
stress
copper (II) chloride 2.5 mM
-2.2
+0.0
-0.1
-0.7
-0.2
stress
acetate 34 mM
-2.2
-0.7
-0.0
+0.2
+0.0
stress
Cholin acetate 19 mM
-1.9
-0.7
+0.1
+0.1
+0.1
carbon source
acetate (C)
-1.5
-0.0
+0.1
-0.5
+0.1
carbon source
acetate (C)
-2.1
-0.7
+0.4
+0.4
+0.3
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.8
-0.3
-0.1
-0.2
-0.0
stress
1-ethyl-3-methylimidazolium acetate 15 mM
-1.3
+0.2
-0.1
-0.3
+0.1
stress
copper (II) chloride 2.5 mM
-1.5
-0.2
+0.3
+0.4
-0.1
stress
Lomefloxacin 0.001 mM
-0.2
+0.3
-0.4
-0.1
-0.4
stress
1-ethyl-3-methylimidazolium acetate 20 mM
-1.2
+0.4
+0.1
+0.1
+0.1
denitrifying
Nitrate reduction, replicate C
-0.1
+0.3
-0.2
-0.4
+0.3
motility
outer cut, LB soft agar motility assay
-0.2
-0.4
-0.6
+0.7
+0.3
motility
outer cut, LB soft agar motility assay
+0.0
+0.3
-0.2
-0.9
+0.6
stress
Spectinomycin 0.2 mg/ml
-0.1
+0.8
-0.4
-0.3
-0.0
carbon source
L-Citrulline
-0.2
+0.6
-0.2
-0.4
+0.2
carbon source
L-Ornithine
-0.1
+0.0
-0.3
-0.2
+0.8
stress
Gentamicin 0.006 mg/ml
-0.5
+1.0
-0.1
+0.2
+0.1
carbon source
L-Citrulline
-0.1
+0.5
+0.4
+0.2
-0.3
stress
Cobalt chloride 0.32 mM
-0.1
+0.7
-0.3
+0.3
-0.0
carbon source
L-Ornithine
-0.2
-0.1
-0.1
+0.1
+1.0
carbon source
L-Citrulline
-0.1
+0.7
+0.4
+0.2
-0.3
stress
Thallium(I) acetate 0.008 mg/ml
+0.2
+0.9
-0.3
+0.1
+0.1
stress
Paraquat dichloride 0.032 mg/mL
-0.2
+1.3
+0.1
+0.1
+0.1
carbon source
butyrate (C)
+0.4
+1.0
-0.1
+0.2
+0.1
stress
Sisomicin 0.008 mg/ml
-0.8
+3.3
-0.5
-0.2
+0.1
carbon source
propionate (C)
+1.0
+4.6
+0.0
-0.2
-0.0
carbon source
propionate (C)
+1.4
+4.4
+0.2
+0.6
-0.3
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