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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_04755 and AO353_04760 are separated by 435 nucleotides
AO353_04760 and AO353_04765 are separated by 343 nucleotides
AO353_04765 and AO353_04775 are separated by 4812 nucleotides
AO353_04775 and AO353_04780 are separated by 56 nucleotides
AO353_04755: AO353_04755 - toxin, at 1,037,438 to 1,042,069
_04755
AO353_04760: AO353_04760 - hypothetical protein, at 1,042,505 to 1,042,864
_04760
AO353_04765: AO353_04765 - hypothetical protein, at 1,043,208 to 1,048,343
_04765
AO353_04775: AO353_04775 - hypothetical protein, at 1,053,156 to 1,053,683
_04775
AO353_04780: AO353_04780 - hypothetical protein, at 1,053,740 to 1,055,698
_04780
Group
Condition
AO353
_04755
AO353
_04760
AO353
_04765
AO353
_04775
AO353
_04780
carbon source
L-Serine (C)
-0.1
-0.2
-0.1
-0.9
+0.2
carbon source
propionate (C)
-0.0
-0.1
-0.1
-0.3
-0.5
denitrifying
Nitrate reduction, replicate C
+0.2
-0.2
+0.1
-0.6
-0.3
carbon source
D-Glucose
+0.1
+0.2
-0.2
-0.6
+0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
+0.2
+0.1
-0.6
+0.1
carbon source
acetate (C)
+0.1
-0.2
-0.1
+0.3
-0.2
motility
outer cut, LB soft agar motility assay
+0.0
+0.1
-0.1
+0.4
-0.6
carbon source
L-Citrulline
-0.0
-0.4
+0.0
+0.7
-0.2
nitrogen source
Glycine (N)
+0.0
+0.2
-0.0
+0.3
-0.3
nitrogen source
nitrate (N)
-0.0
-0.2
+0.1
+0.5
-0.1
carbon source
L-Ornithine
-0.1
-0.3
-0.1
+0.8
-0.0
stress
Thallium(I) acetate 0.008 mg/ml
+0.2
-0.0
+0.1
+0.5
-0.3
nitrogen source
Ammonium chloride (N)
-0.0
-0.2
+0.0
+0.7
-0.1
stress
Rifampicin 0.005 mg/ml
-0.0
-0.2
+0.0
+0.6
+0.1
carbon source
L-Isoleucine (C)
-0.1
+0.4
-0.0
+0.1
+0.3
stress
acetate 17 mM
+0.1
-0.1
+0.1
+0.5
+0.1
pH
Minimal media pH9
+0.0
+0.3
+0.1
+0.4
-0.1
carbon source
L-Citrulline
+0.1
+0.2
-0.1
+0.6
-0.1
stress
Lomefloxacin 0.001 mM
-0.0
-0.2
+0.0
+0.8
+0.1
carbon source
L-Ornithine
+0.1
-0.3
+0.1
+0.7
+0.2
anaerobic
N1B4wt with N2E3m denitrifying replicate C
+0.1
+0.2
+0.0
+0.5
-0.1
stress
1-ethyl-3-methylimidazolium acetate 30 mM
+0.0
-0.0
+0.1
+0.6
+0.3
stress
Gentamicin 0.006 mg/ml
+0.1
+0.1
-0.0
+0.6
+0.1
carbon source
L-Citrulline
+0.1
+0.1
-0.0
+0.5
+0.2
lb
LB
+0.1
+0.1
+0.1
+0.7
-0.1
motility
outer cut, LB soft agar motility assay
+0.2
+0.4
-0.1
+0.5
-0.0
stress
Cisplatin 0.006 mg/ml
+0.2
+0.1
+0.3
+0.6
-0.0
stress
Thallium(I) acetate 0.016 mg/ml
+0.1
+0.2
+0.1
+0.8
-0.0
stress
Sisomicin 0.008 mg/ml
-0.0
+0.6
-0.1
+0.5
+0.3
stress
Cisplatin 0.006 mg/ml
+0.2
-0.0
+0.4
+0.6
+0.2
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