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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_04725 and AO353_04730 are separated by 14 nucleotides
AO353_04730 and AO353_04735 are separated by 309 nucleotides
AO353_04735 and AO353_04740 are separated by 111 nucleotides
AO353_04740 and AO353_04745 are separated by 135 nucleotides
AO353_04725: AO353_04725 - alginate O-acetyltransferase, at 1,022,986 to 1,024,161
_04725
AO353_04730: AO353_04730 - alginate O-acetyltransferase, at 1,024,176 to 1,024,829
_04730
AO353_04735: AO353_04735 - mannose-1-phosphate guanylyltransferase, at 1,025,139 to 1,026,590
_04735
AO353_04740: AO353_04740 - toxin, at 1,026,702 to 1,029,446
_04740
AO353_04745: AO353_04745 - hypothetical protein, at 1,029,582 to 1,034,387
_04745
Group
Condition
AO353
_04725
AO353
_04730
AO353
_04735
AO353
_04740
AO353
_04745
carbon source
L-Leucine (C)
+0.1
-0.3
-0.7
-0.1
-0.1
stress
Doxycycline hyclate 0.0002 mg/ml
-0.4
-0.7
-0.1
-0.1
-0.0
carbon source
L-Ornithine
-0.0
-0.6
-0.3
-0.1
-0.0
stress
Doxycycline hyclate 0.0006 mg/ml
-0.6
+0.1
-0.4
-0.1
+0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.3
-0.2
-0.3
+0.0
-0.2
stress
Cobalt chloride 0.32 mM
-0.3
-0.4
-0.1
-0.2
+0.1
carbon source
D-Glucose
-0.1
-0.8
+0.0
+0.1
-0.0
carbon source
L-Ornithine
-0.5
-0.2
-0.2
-0.0
+0.1
stress
Nalidixic 0.004 mg/ml
-0.4
-0.5
-0.0
+0.1
+0.0
stress
Cobalt chloride 0.32 mM
-0.3
-0.3
-0.2
+0.0
+0.1
carbon source
D-Alanine (C)
-0.1
-0.4
-0.3
-0.2
+0.2
stress
1-ethyl-3-methylimidazolium lysine 10.5 mM
-0.2
-0.6
+0.1
-0.0
+0.0
stress
Cisplatin 0.006 mg/ml
-0.4
-0.5
+0.2
-0.1
+0.2
stress
Benzalkonium Chloride 0.012 mg/ml
-0.2
-0.5
+0.2
-0.0
-0.0
stress
nitrate 200 mM
-0.4
-0.5
+0.3
+0.0
+0.0
carbon source
L-Citrulline
-0.2
-0.5
-0.1
+0.3
+0.1
stress
Cisplatin 0.006 mg/ml
-0.4
-0.3
-0.0
+0.3
-0.0
carbon source
L-Citrulline
-0.5
+0.5
-0.4
+0.0
-0.0
stress
Rifampicin 0.005 mg/ml
-0.5
-0.2
+0.3
+0.0
-0.1
denitrifying
Nitrate reduction, replicate B
-0.2
-0.4
+0.4
-0.1
+0.0
carbon source
D-Glucose
+0.3
-0.2
-0.2
-0.1
+0.1
stress
Lomefloxacin 0.001 mM
+0.2
-0.5
+0.2
-0.0
+0.0
stress
Spectinomycin 0.15 mg/ml
-0.2
-0.3
+0.4
-0.0
+0.0
motility
outer cut, LB soft agar motility assay
+0.3
-0.5
+0.1
+0.1
+0.0
motility
outer cut, LB soft agar motility assay
-0.1
-0.3
-0.3
+0.3
+0.4
carbon source
acetate (C)
-0.1
-0.3
+0.3
-0.0
+0.1
carbon source
L-Citrulline
-0.6
+0.3
+0.3
-0.0
+0.2
carbon source
L-Isoleucine (C)
+0.2
+0.3
-0.3
+0.0
+0.1
motility
outer cut, LB soft agar motility assay
+0.1
-0.3
+0.1
+0.4
+0.2
denitrifying
Nitrate reduction, replicate C
+0.5
-0.2
+0.4
+0.1
-0.0
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