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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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500 nt
AO353_04590 and AO353_04595 overlap by 11 nucleotides
AO353_04595 and AO353_04600 are separated by 450 nucleotides
AO353_04600 and AO353_04605 are separated by 10 nucleotides
AO353_04605 and AO353_04610 are separated by 10 nucleotides
AO353_04590: AO353_04590 - MFS transporter, at 990,336 to 991,652
_04590
AO353_04595: AO353_04595 - GntR family transcriptional regulator, at 991,642 to 992,301
_04595
AO353_04600: AO353_04600 - glutamine ABC transporter ATP-binding protein, at 992,752 to 993,516
_04600
AO353_04605: AO353_04605 - amino acid ABC transporter permease, at 993,527 to 994,624
_04605
AO353_04610: AO353_04610 - amino acid ABC transporter permease, at 994,635 to 995,816
_04610
Group
Condition
AO353
_04590
AO353
_04595
AO353
_04600
AO353
_04605
AO353
_04610
nitrogen source
D-Alanine (N)
+0.2
-0.2
-1.3
-0.9
-1.0
nitrogen source
Gly-Glu (N)
-0.0
+0.1
-1.3
-0.6
-0.9
carbon source
L-Isoleucine (C)
+0.3
-0.2
-0.6
-0.8
-0.2
carbon source
L-Asparagine (C)
+0.0
-0.1
-0.7
-0.3
-0.5
carbon source
L-Leucine (C)
+0.1
+0.2
-0.8
-0.3
-0.5
carbon source
L-Asparagine (C)
+0.0
+0.1
-0.3
-0.6
-0.5
carbon source
L-Citrulline
-0.3
-0.1
-0.4
-0.1
-0.0
nitrogen source
Gly-DL-Asp (N)
-0.1
+0.1
-0.5
-0.2
-0.1
stress
Lomefloxacin 0.001 mM
-0.4
-0.4
+0.2
-0.3
-0.1
carbon source
L-Aspartic Acid (C)
+0.2
-0.3
-0.3
-0.2
-0.1
carbon source
L-Ornithine
-0.0
-0.5
-0.6
-0.2
+0.7
stress
Cobalt chloride 0.16 mM
+0.1
-0.2
-0.4
-0.2
+0.0
carbon source
L-Glutamine (C)
+0.0
+0.2
-0.3
-0.2
-0.2
carbon source
D-Glucose
+0.1
-0.2
-0.3
-0.3
+0.1
carbon source
L-Serine (C)
+0.2
-0.2
-0.3
-0.3
+0.1
carbon source
L-Proline (C)
+0.3
+0.1
-0.1
-0.4
-0.2
pH
Minimal media pH9
-0.1
-0.5
+0.3
+0.2
-0.2
stress
Spectinomycin 0.2 mg/ml
-0.2
+0.1
+0.2
-0.3
-0.1
carbon source
L-Citrulline
-0.1
+0.2
-0.2
+0.2
-0.2
carbon source
L-Valine (C)
-0.3
+0.1
-0.5
+0.4
+0.2
anaerobic
Anaerobic, acetate donor; nitrate and iron
-0.2
-0.0
+0.2
+0.4
-0.3
stress
methylglyoxal 0.009 vol%
+0.2
+0.3
-0.5
+0.1
-0.1
survival
4C survival; 192 hrs
+0.1
+0.3
+0.4
-0.2
-0.0
carbon source
L-Ornithine
+0.0
+0.3
-0.3
+0.1
+0.4
stress
Cisplatin 0.006 mg/ml
-0.3
-0.1
+0.4
+0.5
+0.2
stress
Benzalkonium Chloride 0.012 mg/ml
+0.3
-0.4
+0.3
+0.2
+0.1
denitrifying
Nitrate reduction, replicate C
+0.0
-0.2
+0.1
+0.6
+0.1
carbon source
L-Ornithine
+0.1
-0.2
+0.3
+0.2
+0.3
carbon source
propionate (C)
+0.0
+0.1
+0.5
+0.3
+0.2
stress
Cisplatin 0.006 mg/ml
+0.2
+0.3
+0.9
-0.1
-0.1
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