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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E3
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
AO353_04570 and AO353_04575 are separated by 162 nucleotides
AO353_04575 and AO353_04580 are separated by 87 nucleotides
AO353_04580 and AO353_04585 are separated by 39 nucleotides
AO353_04585 and AO353_04590 are separated by 113 nucleotides
AO353_04570: AO353_04570 - glutaredoxin, at 987,856 to 988,206
_04570
AO353_04575: AO353_04575 - glutathione S-transferase, at 988,369 to 989,304
_04575
AO353_04580: AO353_04580 - GIY-YIG nuclease, at 989,392 to 989,712
_04580
AO353_04585: AO353_04585 - ketosteroid isomerase, at 989,752 to 990,222
_04585
AO353_04590: AO353_04590 - MFS transporter, at 990,336 to 991,652
_04590
Group
Condition
AO353
_04570
AO353
_04575
AO353
_04580
AO353
_04585
AO353
_04590
stress
Cisplatin 0.006 mg/ml
-0.1
-0.3
-0.8
-0.7
-0.3
stress
Tetracycline 0.0016 mg/ml
-0.2
-0.4
-1.0
-0.4
-0.1
motility
outer cut, LB soft agar motility assay
-0.4
+0.0
-0.0
-1.0
-0.1
carbon source
L-Citrulline
-0.4
-0.4
+0.3
-0.6
-0.3
pH
Minimal media pH9
-1.0
-0.0
-0.4
+0.3
-0.2
carbon source
L-Ornithine
+0.4
-0.3
-0.9
-0.7
+0.0
carbon source
L-Ornithine
+0.3
-0.4
-1.1
-0.3
+0.1
stress
Thallium(I) acetate 0.008 mg/ml
+0.1
-0.4
-0.5
-0.3
+0.0
carbon source
L-Ornithine
-0.8
-0.2
+0.0
-0.2
+0.3
stress
Benzethonium chloride 0.025 mM
+0.2
-0.2
-0.5
-0.5
+0.1
stress
Cisplatin 0.006 mg/ml
-0.5
-0.5
+0.2
-0.2
+0.2
carbon source
L-Citrulline
-0.2
-0.4
-0.3
+0.6
-0.1
stress
Sisomicin 0.008 mg/ml
+0.4
-0.5
+0.2
-0.3
-0.1
denitrifying
Nitrate reduction, replicate B
-0.6
+0.1
+0.4
-0.3
+0.1
carbon source
D-Glucose
-0.0
-0.4
-0.4
+0.3
+0.3
stress
Lomefloxacin 0.001 mM
-0.1
-0.5
+0.7
+0.1
-0.4
pH
Minimal media pH9
-0.7
+0.1
+0.4
+0.2
-0.1
carbon source
acetate (C)
+0.2
-0.5
+0.6
-0.2
-0.1
stress
Cholin acetate 10 mM
+0.2
-0.3
+0.5
-0.2
-0.1
anaerobic
Anaerobic, acetate donor; nitrate and iron
+0.0
-0.1
+0.8
-0.2
-0.2
carbon source
L-Isoleucine (C)
+0.1
-0.1
+0.6
-0.4
+0.3
carbon source
propionate (C)
+0.7
+0.1
-0.6
+0.3
+0.0
stress
Rifampicin 0.005 mg/ml
+0.2
-0.2
+0.3
+0.4
-0.2
motility
outer cut, LB soft agar motility assay
-0.2
-0.1
+0.6
+0.6
-0.3
carbon source
pyruvate (C)
+0.6
-0.3
+0.3
+0.0
+0.1
lb
LB
+0.3
-0.3
+0.9
-0.1
+0.3
survival
4C survival; 672 hrs
+0.7
+0.1
-0.1
+0.6
+0.0
carbon source
L-Citrulline
+0.5
-0.1
+0.2
+0.2
+0.4
stress
Thallium(I) acetate 0.008 mg/ml
+0.4
-0.2
+0.9
+0.2
+0.2
nitrogen source
Inosine (N)
+0.3
+0.2
+0.8
+0.1
+0.2
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AO353_04580
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